Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 532 / 0 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 206 / 1e-62 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 206 / 4e-62 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 202 / 1e-60 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 77 / 3e-15 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004175 [exp] 566 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 565 / 0 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 533 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 531 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 524 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 521 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 504 / 3e-179 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 486 / 2e-172 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10021046 [exp] 475 / 3e-168 AT3G12120 489 / 5e-174 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046200 [exp] 536 / 0 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 526 / 0 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 525 / 0 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 502 / 1e-178 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 443 / 3e-156 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.010G187800 [exp] 212 / 2e-64 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 211 / 5e-64 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 207 / 2e-63 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.006G101500 [exp] 204 / 4e-61 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 203 / 8e-61 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10004178 pacid=23153313 polypeptide=Lus10004178 locus=Lus10004178.g ID=Lus10004178.BGIv1.0 annot-version=v1.0 ATGCACTTTCCGATAGCTAGCCTTTGTCTCATGCTAAAAACAGGCCATACATGGCGCCACAAAGCACTGCTCTATCCCGCCGGCGCCAAGCGGTTCCCGT CCTCAAAGCCGCCGTTCACACTCGCCGACCTCAAGAAGGCCATTCCGCCGCACTGTTTCAAAAGATCCATCCCACGTTCCTTCTCCTACTTGGTTTTCGA CCTCATCGTCGCCGCCGTCTTCTACCACATCGCCGCCACTTATTTCCCCCTCATCCCCAAACCTCTCTCCTACGTGGCGTGGCCGGCCTACTGGTTCGTC CAGGGCAGCGTCCTGACCGGTGTGTGGGTCATCGGCCACGAGTGCGGCCACCACGCATTTAGCGAGCACCAGTGGCTCGACGACCTGGTCGGGTTCATTC TCCACTCGGCCCTCCTCACCCCTTACTTCTCGTGGAAGATCAGCCACCGCCGCCACCACGCCAACACCTGCTCCCTCGAGCGCGACGAGGTGTACATTCC GAGGAAGAAGTCTCAGTTGCGGTGGTGGTACTCGAGCTACCTGAACAACCCGCCCGGCAGACTTTTGGCGCTGGCTTACACCATCCTCCTCGGCTGGCCT TCCTACTTGACTTTCAACCTATCCGGTAGGGAATACAACGGTTTCGCCTGTCATTTCTACCCGATGTCCCCTATTTACAGCGACCGGGAGCGGGCCGAGG TATTCGCCTCCGATGTTGGCTTGCTTGTTGTGTGCTTCGCGCTGTACAAACTTATCCTCGTCAAGGGAATGGCGTGGGTTTTTTGCGTCTACGGGGCTCC GGTCATGGTGGTGAACGGATTCTTCATAACCATCACTTACTTGCACCACACTCATCTTGCGGTCCCGCGGTACGATTCCTCGGAATGGGATTGGTTGAGG GGAGCCCTAGCAACGATGGATAGAGACTTTGGGTTATTGAACAGGGTGTTCCATAACGTTACAGATACTCATGTGACGCACCATCTGATCTCGACCATCC CTCACTACCATGCCATGGAAGCCAACAACGCGATTAGGCCCGTGTTGGGGGACTACTACCACATCGACAGGACGCCTGTCGTTAAGGCGTTGTGGAGGGA GGCTAAGCAGTGTGTTTACATCGAGGCGGACGAAGGTGAAAATAACAAAGGCGTGTTCTGGTTCAATACCAAGCTCTAA
AA sequence Show only first row Show all	>Lus10004178 pacid=23153313 polypeptide=Lus10004178 locus=Lus10004178.g ID=Lus10004178.BGIv1.0 annot-version=v1.0 MHFPIASLCLMLKTGHTWRHKALLYPAGAKRFPSSKPPFTLADLKKAIPPHCFKRSIPRSFSYLVFDLIVAAVFYHIAATYFPLIPKPLSYVAWPAYWFV QGSVLTGVWVIGHECGHHAFSEHQWLDDLVGFILHSALLTPYFSWKISHRRHHANTCSLERDEVYIPRKKSQLRWWYSSYLNNPPGRLLALAYTILLGWP SYLTFNLSGREYNGFACHFYPMSPIYSDRERAEVFASDVGLLVVCFALYKLILVKGMAWVFCVYGAPVMVVNGFFITITYLHHTHLAVPRYDSSEWDWLR GALATMDRDFGLLNRVFHNVTDTHVTHHLISTIPHYHAMEANNAIRPVLGDYYHIDRTPVVKALWREAKQCVYIEADEGENNKGVFWFNTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004178 [exp]	0	1
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10023711 [exp]	2.2	0.7892
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004177 [exp]	19.8	0.7705
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	30.4	0.7454
AT1G44970			Peroxidase superfamily protein...		Lus10033193 [exp]	31.1	0.7273
AT5G52450			MATE efflux family protein (.1...		Lus10019492 [exp]	32.3	0.7277
					Lus10014855 [exp]	45.8	0.6983
					Lus10008695 [exp]	48.1	0.7336
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	67.1	0.6734
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10041440 [exp]	82.8	0.6747
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	128.3	0.6910

Compare expression of checked genes

Lus10004178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.