Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 487 / 8e-173 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 217 / 4e-67 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 207 / 8e-63 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 198 / 3e-59 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 78 / 1e-15 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021047 [exp] 741 / 0 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004181 [exp] 711 / 0 AT3G12120 494 / 1e-175 fatty acid desaturase 2 (.1.2) Lus10021046 [exp] 694 / 0 AT3G12120 489 / 5e-174 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 580 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 570 / 0 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 561 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 534 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 529 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 516 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046200 [exp] 496 / 2e-176 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 492 / 8e-175 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 476 / 5e-168 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 454 / 8e-160 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 400 / 9e-140 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.016G117500 [exp] 220 / 1e-67 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 220 / 2e-67 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 218 / 2e-67 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.010G187800 [exp] 219 / 3e-67 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 218 / 8e-67 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10004180 pacid=23153339 polypeptide=Lus10004180 locus=Lus10004180.g ID=Lus10004180.BGIv1.0 annot-version=v1.0 ATGGTATCCTCCGACAGAACCACGAACAACAAAACCACCACGAAGCGGCCGCCGCTGTCAAAACCGCCGTTCACCCTCGCCGACATCAAGAGAGCCGTAC CGCCGCACTGCTTCAAAAGATCCCTCGTCAAATCATTCGCCTACCTAGCCTACGACCTCACCGTCATCACCTTCCTCTACCACATCGCCAACACATACTT CCACCTCCTCCTCAAGCCTCTCTCCTACGTGGCGTGGCCCCTCTACTGGGCCGCTCAATGTTGCTTCTTCGTCGCTTTATGGATGGTGGGTCACGATTGT GGCCACCATTCGTTCAGCGACTATCAGTGGATTGACGACACTGTCGGTTTTATCATCCACTCGTTCCTCCTTGCTCCTTATTTCTCCTGGAAGCACAGCC ACCGCCGCCATCATGCCAACTCCGGATCTCTAGAACGCGACGAGTCGTTCGTCCCGAAAACCAAAGACAATATCGTCTGGCACTTCAAGTACCTCGACCA CCTACCGGGGCGGATCTTCTACGTGGTTTTCACTCTGACCCTCGGGTGGCCACTATACTTGATGTTCAACATCACTGGAAGGCCGTACAAGGATGGATTC GCCAGCCATTTCTACCCCATGTCGCCGATCTATGAGGATCACGAGCGGTTCGGGATATTCCTCTCCGATGTTGGAATGCTCGCCATGTGGTTCACGCTCT ACAAGCTCTCAGTGGCATATGGAGTCGGTTGGGTTCTTTGTGTGTATTTTATTCCGTTGGTTTTACAAAATGCTTTGTTTGTTACGATCACTTACTTGCA CCACACGCATTTGAACTTACCTCACTATGACTCTTCGGGGTGGGACTGGATGAGGGGGTCGCTGACGACTGTGGATAGAGACTATGGGTTTTTGAACAAG GTGTTGCATAACGTGACAGATACTCACGTGGCGCACCATTTGTTCACACATATGCCTCATTACCATCAATCGGAAGCGACCAAGGCGTTCATTCCGGTTC TGGGGGAGTACTACCAGGCTGATCCGACACCGTTCTACAAGGCGTTGTGGAGGGAGATGAAGCATTGTGTTTATGTCGAGCAAGATGAGGATGCGGATTC CGATCAGAACAAAAGAGGAGTGTACTGGTACAAAACCAAGTTGTGA
AA sequence Show only first row Show all	>Lus10004180 pacid=23153339 polypeptide=Lus10004180 locus=Lus10004180.g ID=Lus10004180.BGIv1.0 annot-version=v1.0 MVSSDRTTNNKTTTKRPPLSKPPFTLADIKRAVPPHCFKRSLVKSFAYLAYDLTVITFLYHIANTYFHLLLKPLSYVAWPLYWAAQCCFFVALWMVGHDC GHHSFSDYQWIDDTVGFIIHSFLLAPYFSWKHSHRRHHANSGSLERDESFVPKTKDNIVWHFKYLDHLPGRIFYVVFTLTLGWPLYLMFNITGRPYKDGF ASHFYPMSPIYEDHERFGIFLSDVGMLAMWFTLYKLSVAYGVGWVLCVYFIPLVLQNALFVTITYLHHTHLNLPHYDSSGWDWMRGSLTTVDRDYGFLNK VLHNVTDTHVAHHLFTHMPHYHQSEATKAFIPVLGEYYQADPTPFYKALWREMKHCVYVEQDEDADSDQNKRGVYWYKTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004180 [exp]	0	1
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10018119 [exp]	1.0	0.7524
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10043386 [exp]	7.1	0.7293
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043120 [exp]	7.2	0.7338
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	11.1	0.7227
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10008139 [exp]	13.4	0.7161
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	19.1	0.6871
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	29.7	0.6751
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031881 [exp]	31.3	0.6934
AT5G40450			unknown protein		Lus10022266 [exp]	38.5	0.7141
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	44.4	0.7071

Compare expression of checked genes

Lus10004180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.