Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06760 71 / 9e-16 AtLEA4-5, LEA4-5 Late Embryogenesis Abundant 4-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021044 [exp] 190 / 1e-60 AT5G06760 87 / 8e-21 Late Embryogenesis Abundant 4-5 (.1) Lus10016273 [exp] 102 / 3e-27 AT5G06760 120 / 3e-35 Late Embryogenesis Abundant 4-5 (.1) Lus10012018 [exp] 100 / 1e-26 AT5G06760 123 / 3e-36 Late Embryogenesis Abundant 4-5 (.1) Lus10012009 [exp] 76 / 4e-18 AT5G06760 71 / 9e-17 Late Embryogenesis Abundant 4-5 (.1) Lus10016266 [exp] 70 / 6e-16 AT5G06760 68 / 1e-15 Late Embryogenesis Abundant 4-5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046350 [exp] 77 / 1e-17 AT5G06760 101 / 2e-27 Late Embryogenesis Abundant 4-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03760 [flax] [poplar] LEA_1 Late embryogenesis abundant (LEA) group 1
Representative CDS sequence Show only first row Show all	>Lus10004182 pacid=23153340 polypeptide=Lus10004182 locus=Lus10004182.g ID=Lus10004182.BGIv1.0 annot-version=v1.0 ATGCAGTCCATGAAGGAAACCGCTGCCAACATCGGCGCATCTGCCAAGGCCGGCATGGAGAAGACCAAAGCCGTCGTTCAAGAGAAGGTTGAGAAAGTTT CGGCGCACGATCCGGTGCAGAAGGAAATGGCGAGGGAGAAGAAAGAGCAGAGGATTGCTGAGGCTGAGGCGATGAAGCACAACGCTAAAGCGCACAACGC CGCGGCGAAGCAAGGAGGGCAAGTCCTCGGCGCTGACTACACCACCGGCTCTACCGACTACATCACTCCTGGACACCGGCAGACCCACGGTGGTGGTATT GTGGGAGAGGCGGTGTCGACATTGACCGGCGGGCACCACGATCATCCGGCCGGGGTCGGGGCCGGGACCCACCACATGCCAGGGCAGCAGCACGGTGGGA TTGTGGGAGAGGCGGTGTCGAAGGTTGCTGGCGGGCATCACGGTCACCCTGTCGGGACAGGGCAGCAGCACCACGGTGGGGTTGTGGAAGAGGCAGTGAC GAGGTTGACCGGCGACAAAGCGGGTTACAATACCGGGGCGGGCGGAACGGGTTACGGGACAGGGGGGAGACTGAATTGA
AA sequence Show only first row Show all	>Lus10004182 pacid=23153340 polypeptide=Lus10004182 locus=Lus10004182.g ID=Lus10004182.BGIv1.0 annot-version=v1.0 MQSMKETAANIGASAKAGMEKTKAVVQEKVEKVSAHDPVQKEMAREKKEQRIAEAEAMKHNAKAHNAAAKQGGQVLGADYTTGSTDYITPGHRQTHGGGI VGEAVSTLTGGHHDHPAGVGAGTHHMPGQQHGGIVGEAVSKVAGGHHGHPVGTGQQHHGGVVEEAVTRLTGDKAGYNTGAGGTGYGTGGRLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10004182 [exp]	0	1
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	3.3	0.7943
AT1G12310			Calcium-binding EF-hand family...		Lus10024567 [exp]	3.5	0.7732
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	9.8	0.7753
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	10.6	0.7461
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003887 [exp]	12.0	0.7607
AT5G51910	TCP	TCP19	TCP family transcription facto...		Lus10002963 [exp]	13.3	0.6847
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	17.0	0.7339
AT2G27730			copper ion binding (.1)		Lus10004865 [exp]	22.0	0.6979
AT1G71730			unknown protein		Lus10029741 [exp]	22.9	0.6910
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10013489 [exp]	24.9	0.7716

Compare expression of checked genes

Lus10004182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.