Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12130 189 / 4e-58 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT5G06770 188 / 2e-57 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G19360 59 / 3e-09 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G25970 52 / 7e-07 KH domain-containing protein (.1) AT1G32360 48 / 9e-06 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT1G33680 47 / 1e-05 KH domain-containing protein (.1) AT2G35430 46 / 1e-05 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT4G10070 44 / 0.0002 KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021043 [exp] 531 / 0 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10016272 [exp] 347 / 3e-119 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 206 / 2e-65 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012016 [exp] 88 / 1e-21 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012015 [exp] 71 / 2e-15 AT3G12130 66 / 1e-14 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10043287 [exp] 52 / 3e-07 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10019431 [exp] 52 / 4e-07 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 52 / 4e-07 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 52 / 5e-07 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191900 [exp] 358 / 1e-123 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.016G046600 [exp] 351 / 8e-121 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.001G013200 [exp] 339 / 9e-116 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 337 / 6e-115 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.004G169500 [exp] 60 / 7e-10 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 60 / 9e-10 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 56 / 2e-08 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.018G055300 [exp] 56 / 3e-08 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.001G140800 [exp] 52 / 3e-07 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.006G231800 [exp] 52 / 4e-07 AT2G25970 393 / 5e-128 KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10004183 pacid=23153318 polypeptide=Lus10004183 locus=Lus10004183.g ID=Lus10004183.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCCTCTTGCCAACCTACAGGTGGTGATAACGTCAACAAGGACGAAGAAGAGGAGATGACAGAGGTACCCGAAGATCAGAAGAGAAGGGGCA GGAAACTAACAGGCGACGAAGAGATCAAGCACGGCATCGGTGAGAAACTTTTCTTGTTTTATGTACCTGTCGGAGTTCAGACTTCGCTTCGGGTTGTTGG GTTGCTTTCGTTTCTGGATCTGAACTGCACAATGGATGCTAGGAAGAGAGCGAGGCCTGATGGCGCCGTCAACAAATACAATGGCGGGTTCAAGAAATCT AGACCCGAAATGGACCCGTTATCAACCGCTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGTACTGCTGGGTGTCCATTTGGGGACGGCTGCC ACTTTCAGCACTACGTTCCTGGAGGGTACAATGCCGTTTCCCAAATCATGAACAGGTCATCATCCGCCACCCCCACGCTGAAACAAATCATGAACATGCC ACCACCACCGCAATCGGTCTCGAACGGTGCTGCTGCTAATCCACCTGCAATCAAGAACCGCATGTGCAACAAATACAACTCCGCAGAAGGATGCAAGTTC GGCGACAAATGCCATTTTGCACACGGGGAGTGGGAGCTCGGAAGGACTGTTGCTCCGTCTCACGACAATCACCTTCGCATGACTGGAGGACCTGGACCTC TTCCCGGTCGCAACATGAACCGGATGGATCAGCCGCCCCCACCCGCCGCACCCCCTCTTGTTGGATTTGGCGATACAGCGACTGCCAAAATCAGCGTTGA CGCGTCCCTCGCGGGACCCATCATCGGGAAAGGCGGCGTGAACTCTAAGCAGATATGTAGGCAGACGGGAGCCAAGCTGTCCATCAGGGATCATGAAACG AATCCCAACCTTAGGAACATCGAGTTAGAAGGGACGTTTGATCAGATCGCTCAAGCTAGCGCGATGGTGAAAGAGGTAATCGCAAACATTGTTACGATAG GTGGTGGCGGCCAAGCTGCCAGACCTTCTAGCTTCTCAGGGGACAAGCATCATCCTGGAAGCAATTACAAGACAAAGATATGCGACAATTTCACGAAAGG AACTTGCAGCTTTGGTCAGAGATGCCATTTTGCTCACGGTGATACTGAATTGCGCAAGAATACTTCAACCGGTTAG
AA sequence Show only first row Show all	>Lus10004183 pacid=23153318 polypeptide=Lus10004183 locus=Lus10004183.g ID=Lus10004183.BGIv1.0 annot-version=v1.0 MASASCQPTGGDNVNKDEEEEMTEVPEDQKRRGRKLTGDEEIKHGIGEKLFLFYVPVGVQTSLRVVGLLSFLDLNCTMDARKRARPDGAVNKYNGGFKKS RPEMDPLSTAVGSKSKPCTKFFSTAGCPFGDGCHFQHYVPGGYNAVSQIMNRSSSATPTLKQIMNMPPPPQSVSNGAAANPPAIKNRMCNKYNSAEGCKF GDKCHFAHGEWELGRTVAPSHDNHLRMTGGPGPLPGRNMNRMDQPPPPAAPPLVGFGDTATAKISVDASLAGPIIGKGGVNSKQICRQTGAKLSIRDHET NPNLRNIELEGTFDQIAQASAMVKEVIANIVTIGGGGQAARPSSFSGDKHHPGSNYKTKICDNFTKGTCSFGQRCHFAHGDTELRKNTSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	1.4	0.9508
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10003343 [exp]	2.4	0.9280
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	3.0	0.9227
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	9.4	0.8964
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	11.8	0.9075
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	12.5	0.9070
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	12.6	0.8634
AT2G11890			adenylate cyclases (.1.2)		Lus10002992 [exp]	13.9	0.8813
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	16.3	0.8954
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	16.3	0.8804

Compare expression of checked genes

Lus10004183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.