Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 288 / 2e-95 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021042 [exp] 535 / 0 AT3G57990 341 / 6e-116 unknown protein Lus10012013 [exp] 295 / 8e-98 AT3G57990 296 / 3e-98 unknown protein Lus10016270 [exp] 288 / 3e-95 AT3G57990 300 / 4e-100 unknown protein Lus10016269 [exp] 150 / 6e-45 ND 169 / 1e-52 Lus10012012 [exp] 150 / 1e-44 ND 164 / 2e-50 Lus10000401 [exp] 91 / 6e-22 AT3G57990 107 / 4e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191800 [exp] 295 / 5e-98 AT3G57990 299 / 1e-99 unknown protein Potri.016G046900 [exp] 290 / 2e-96 AT3G57990 345 / 3e-118 unknown protein Potri.001G145400 [exp] 92 / 2e-20 AT3G57990 80 / 3e-16 unknown protein Potri.003G088500 [exp] 75 / 1e-14 AT3G57990 58 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004184 pacid=23153330 polypeptide=Lus10004184 locus=Lus10004184.g ID=Lus10004184.BGIv1.0 annot-version=v1.0 ATGAAAGCCTCGCTCAAATTCCGCGAGGAGCAGAAGCCGCTGTTCCGAGCGAACCTGCCGCTGAGCATCATGGGTTTGTCATTCCAGTCTGGGATCGTCG CCGGCGAAGGTAAAGAGCTCTCTCTCAACCTCTCAACCTTCTTCGAATCAGGGCCGTCGTTCAAGGTCGCCTACCGTCCGAACGATTCGCAGAATCCGTT CTCGCTTGTGCTCAAGACAGGTACTGGGCCGTTTGGGTCGCCTTCGGCGGCGAGCCCCTTGGTGATGAGCGCGGAGTTCAATTTCGTAGGGAGTGGAAAC CCTAGCTTCATGCTTCACCTGAAGCCGAGGTTTGGGGATTTCTCGATTAAGAAGTCGACGTCGTCGTATTTGGAGAAGTGGCAGAACGGAGTCGTTTCGA AGAAATCTTCGGTAGCAGAGGAAGACGGATCGGCCGTTGTGGTGGAGAAGCCAGTGTTCAACGGGATCGGAGCCGGCGGCGGAGTTGAAATTGGCGGGGG AGGATTAGGGTTTAACGCGAAGAAGTTGACTAGTCTTCCACCGCCGACGTCGAATGCGCTCGCTGCTGGTTTATCCGGCGTCGAAGTCACAGCAATCACG AGTTTCCCCTTGAGGAGTCACGCCCTGATGAGCTTCCGATGGGGGCTTAGGGTTCCGGCCGAGGGGCTCGACTCGATGGCCGCAGCAATCAATTTCAGGA AGATGCCTTTCCTCGTGATGAACAAGATAGGCATCGAGCACGTCTACCAAACTTATTCAAAATCGGAAAAGGCTACCGCCGCTGCAAAAGCGAAGGACGA CGTGGCTGAGACTTGCTTGACAGTGAAGCAACAGCTGGATACTCTGCAGTTTGAGAATTCGCAGCTGAGGAAAGCCATGGACGATCTGAGACAAGAGTTT AGCTCAAGCAAGTACCTTTTGCCACCATCATCGCCAGAATCCAGCTTCAGCAGGTACAGAGAATCGGATAGGAACAGGGCATGGAACTCGAGTGGGAAGC AGAATGAGAAGAGTGGTTCTTCAGTGGAAGAGGATGTGAGTGAAGAGCTGAAGAAAGCTCTGCAGGGAGCTTCAGCTGGAGTTAGCGGTGCTTGA
AA sequence Show only first row Show all	>Lus10004184 pacid=23153330 polypeptide=Lus10004184 locus=Lus10004184.g ID=Lus10004184.BGIv1.0 annot-version=v1.0 MKASLKFREEQKPLFRANLPLSIMGLSFQSGIVAGEGKELSLNLSTFFESGPSFKVAYRPNDSQNPFSLVLKTGTGPFGSPSAASPLVMSAEFNFVGSGN PSFMLHLKPRFGDFSIKKSTSSYLEKWQNGVVSKKSSVAEEDGSAVVVEKPVFNGIGAGGGVEIGGGGLGFNAKKLTSLPPPTSNALAAGLSGVEVTAIT SFPLRSHALMSFRWGLRVPAEGLDSMAAAINFRKMPFLVMNKIGIEHVYQTYSKSEKATAAAKAKDDVAETCLTVKQQLDTLQFENSQLRKAMDDLRQEF SSSKYLLPPSSPESSFSRYRESDRNRAWNSSGKQNEKSGSSVEEDVSEELKKALQGASAGVSGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57990			unknown protein		Lus10004184 [exp]	0	1
AT4G38495			unknown protein		Lus10004196 [exp]	1.4	0.7605
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	3.6	0.7744
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	6.7	0.7310
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10012352 [exp]	13.8	0.6796
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	14.0	0.7152
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10017293 [exp]	15.2	0.6991
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	17.1	0.6887
AT3G63390			unknown protein		Lus10024829 [exp]	18.3	0.6976
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	20.7	0.7012
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	20.7	0.6938

Compare expression of checked genes

Lus10004184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.