Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20760 70 / 4e-14 Nse4, component of Smc5/6 DNA repair complex (.1) AT1G51130 64 / 5e-12 Nse4, component of Smc5/6 DNA repair complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021041 [exp] 75 / 1e-16 AT1G51130 108 / 6e-28 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10013735 [exp] 73 / 4e-15 AT1G51130 368 / 2e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10039205 [exp] 71 / 2e-14 AT1G51130 369 / 1e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10042459 [exp] 62 / 3e-11 AT1G51130 342 / 3e-115 Nse4, component of Smc5/6 DNA repair complex (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T028032 [exp] 81 / 7e-18 AT1G51130 395 / 3e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.003G212600 [exp] 81 / 7e-18 AT1G51130 394 / 9e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.016G046802 [exp] 79 / 3e-17 AT1G51130 361 / 7e-123 Nse4, component of Smc5/6 DNA repair complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08743 [flax] [poplar] Nse4_C Nse4 C-terminal
Representative CDS sequence Show only first row Show all	>Lus10004185 pacid=23153321 polypeptide=Lus10004185 locus=Lus10004185.g ID=Lus10004185.BGIv1.0 annot-version=v1.0 ATGCGAGTGAACAGGCCCAGAGAGCAAGTAGCCGATGCAGAGGCTCTGCTAGGGGTTACGAGCTCGTTGGCGAATTGCGGAGAAAGAGTTTCTCCTTCGC AATTCGTCGGTTTACTTCTTAAGAAATTTGGGGCTCCTCCTCGTACAAAGGTTGGCTCCAAACAGAGGAAGGAGATTATTTCCGTCAACTGGAAAGAGAT CGGGGTTTCTGCCTCTCATATATTCAAGAGATTCTCTGGAATATCCACAATGTTTGGCACGAATAATTTCCTCAAGAAGAGGAAGGTTCATGTATATACG AGCAGGAGAAAACGGCGCAGTGCAGCCGCTGGGGCGGCGAAACAGGCTGATGATGGTGTTGAGAAAGAGAAGAGTGGTGGAAGGAACAATGCGTATTATG TTCGATATCCTGAGGAAGGAAAAAAGACTCCGAGGAACGCCCCATCTGCAGCTCAGGTTGCCACTGGCGAAGTATCGTACCGGCATTTTGTCTTCAGATA TGGATGCAGTGATTGGCAGTTGATGTGCTCTTCAGTTGGTGTTGGGAAGGAGCTTATGCCAAACAGGATTCAAGTGAAGATAGAAAAGTAG
AA sequence Show only first row Show all	>Lus10004185 pacid=23153321 polypeptide=Lus10004185 locus=Lus10004185.g ID=Lus10004185.BGIv1.0 annot-version=v1.0 MRVNRPREQVADAEALLGVTSSLANCGERVSPSQFVGLLLKKFGAPPRTKVGSKQRKEIISVNWKEIGVSASHIFKRFSGISTMFGTNNFLKKRKVHVYT SRRKRRSAAAGAAKQADDGVEKEKSGGRNNAYYVRYPEEGKKTPRNAPSAAQVATGEVSYRHFVFRYGCSDWQLMCSSVGVGKELMPNRIQVKIEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	0	1
					Lus10011496 [exp]	2.0	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	3.2	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	3.5	1.0000
					Lus10024550 [exp]	4.5	1.0000
					Lus10034512 [exp]	4.7	1.0000
					Lus10008049 [exp]	4.9	1.0000
					Lus10011759 [exp]	5.2	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10036313 [exp]	5.5	1.0000
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10019419 [exp]	5.7	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	6.7	1.0000

Compare expression of checked genes

Lus10004185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.