Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05990 487 / 9e-173 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021040 [exp] 667 / 0 AT2G05990 559 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10016274 [exp] 559 / 0 AT2G05990 545 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10012019 [exp] 543 / 0 AT2G05990 534 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018323 [exp] 48 / 7e-06 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10017129 [exp] 46 / 2e-05 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046701 [exp] 562 / 0 AT2G05990 526 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G013500 [exp] 528 / 0 AT2G05990 553 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T014016 [exp] 519 / 0 AT2G05990 549 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G212700 [exp] 517 / 0 AT2G05990 546 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G125900 [exp] 44 / 0.0001 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004186 pacid=23153302 polypeptide=Lus10004186 locus=Lus10004186.g ID=Lus10004186.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCTGCAACTCCTACTACAAGTGTGGCAACAGCCAGGGCATGTATCTCATCGCCCCGTAAAGTATTCATGCAAAGGACTGCAAGTTTCAGTA CCGGATCCAAAGATGCTTTGAACCACGTCTCCTTGAGCCAGACCTTCTTTCAGAAGAAGCGCAATTCGATGTCCCGGGTCGTGACAACAAGAGCAATGGC CACTGCAAGCGAGACTAACCCCTTGCCGGGACTGCCTGTCGATTTACGAGGTAAGAGAGCTTTCATTGCTGGTATAGCTGATGACAACGGGTATGGTTGG GCTATAGCAAAATCACTTGCTGCAGCTGGTGCTGAAATTCTTGTTGGAACATGGGTGCCTGCATTGAACATATTCGAAAGCAGTCTGCGACGTGGAAAGT TTGACGAATCGCGTGTATTGCCAGATGGTTCTCTAATGGAAATTGCTAAAGTGTATCCAATGGATGCGGTTTTCGATAGTCCAGAGGATGTTCCTGAAGA TATAAAAACAAACAAGCGGTATGCAGGATCCACAAAGTGGACTGTTAAGGAGCTTGCTGAATCAGTGAAACAAGACTATGGCAGCATTGACATCCTAGTC CACTCTCTTGCTAACGGGCCAGAGGTCGTCAAGCCTCTTCTCGAGACCTCAAGATACGGATACCTTGCTGCCATCTCTGCATCAAGCTACTCCTTTATTT CCCTTCTTCAGAACTTCATTCCTATAATGAATCCAGGTGGTGCAACAATTTCCTTGACCTACCTTGCTTCTGAAAAGATCATTCCTGGCTATGGTGGTGG GATGAGTTCAGCAAAGGCCGCTTTGGAGAGCGACACACGTGTGCTAGCCTTTGAAGCTGGAAGAAAGCACAACATCAGAGTGAACACAATATCTGCAGGT CCATTGAGAAGTAGGGCAGCAAAGGCAATTGGTTTCATCGACATGATGATCGACTACTCATCAGCCAATGCACCCCTCCAGAAAGAGCTAGCTGCAGAGG AAGTAGGGAACGCTGCTGCATTCCTGGCTTCGCCTTTGGCTTCGGCCATCACGGGGACTGTCCTGTATGTAGACAATGGTCTAAACGCAATGGGAGTAGG AGTCGACAGCCCCATTTTCGAGAACCTCAACATTCCAAAAGCTGCCTAA
AA sequence Show only first row Show all	>Lus10004186 pacid=23153302 polypeptide=Lus10004186 locus=Lus10004186.g ID=Lus10004186.BGIv1.0 annot-version=v1.0 MAAAATPTTSVATARACISSPRKVFMQRTASFSTGSKDALNHVSLSQTFFQKKRNSMSRVVTTRAMATASETNPLPGLPVDLRGKRAFIAGIADDNGYGW AIAKSLAAAGAEILVGTWVPALNIFESSLRRGKFDESRVLPDGSLMEIAKVYPMDAVFDSPEDVPEDIKTNKRYAGSTKWTVKELAESVKQDYGSIDILV HSLANGPEVVKPLLETSRYGYLAAISASSYSFISLLQNFIPIMNPGGATISLTYLASEKIIPGYGGGMSSAKAALESDTRVLAFEAGRKHNIRVNTISAG PLRSRAAKAIGFIDMMIDYSSANAPLQKELAAEEVGNAAAFLASPLASAITGTVLYVDNGLNAMGVGVDSPIFENLNIPKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10004186 [exp]	0	1
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	2.4	0.9291
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	9.2	0.8996
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	9.5	0.8731
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	14.8	0.8870
AT2G21340			MATE efflux family protein (.1...		Lus10017498 [exp]	15.5	0.8633
AT2G25100			Polynucleotidyl transferase, r...		Lus10028856 [exp]	18.0	0.8629
AT5G62350			Plant invertase/pectin methyle...		Lus10027198 [exp]	18.7	0.8345
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	20.0	0.8781
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10010215 [exp]	20.5	0.8512
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	21.4	0.8848

Compare expression of checked genes

Lus10004186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.