Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19630 204 / 2e-66 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021039 [exp] 331 / 2e-116 AT5G19630 267 / 5e-91 alpha/beta-Hydrolases superfamily protein (.1) Lus10031220 [exp] 211 / 2e-69 AT5G19630 331 / 3e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10031797 [exp] 210 / 9e-69 AT5G19630 325 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013700 [exp] 209 / 1e-68 AT5G19630 324 / 9e-114 alpha/beta-Hydrolases superfamily protein (.1) Potri.T056064 [exp] 207 / 7e-68 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G212400 [exp] 207 / 7e-68 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G191700 [exp] 0 / 1 AT5G19630 77 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02129 [flax] [poplar] Peptidase_S15 X-Pro dipeptidyl-peptidase (S15 family)
Representative CDS sequence Show only first row Show all	>Lus10004187 pacid=23153317 polypeptide=Lus10004187 locus=Lus10004187.g ID=Lus10004187.BGIv1.0 annot-version=v1.0 ATGCCCGCCTCTTCAAGCCCGCCGACGACGACGAACCCGCCGCACCCACCGCCGTCGTCCTCGTCCACCCTTACCCCAAGCTCGGCGGCTGGCCGGACAT CCTGCCAGATCATCATGCAGGGCATTGCCTCCAGGCTCTCCATCAAGGGATTCACCGCCATCACCTTCGACATGAGGGGCGTCGGACGATCTACCGGGAA GTCCTCCGTCACCGGTATTTTCGAAATTGAGGACGTCGTCGCCGTCTGCACCTGGGTCTCCGAGAATTTTCCCGTCGAGAGAATCTTGTTGGTGGGTTCC TCCGCAGGAGCACCGATAGCAGGTTCGGCACTTGATCAGCTGGAGAAAGTGGTGGGATACGTGAGCATAGGCTACCCGTTCGGGTTTGCTGCTTCGTTTT TATTTGGGAAGCATTACAAACCCACGTTGAAGTCCAGGAAGCCGAAGCTGTTCATCATGGGGAGCGCGGATTGGTTCACCAGCGTGAGGCAGCTGAAGAG CAAGGTCAAGAGTTGCGAGGGTCGAGCCGAGATGCATCTGATACAAGGAGCAGGCCATTTCGAACTCGAAGGCCCCGATTTCGATTCCGCCATTGTCAAT ATGATTGTATCCTTCCATGAAACACTATAG
AA sequence Show only first row Show all	>Lus10004187 pacid=23153317 polypeptide=Lus10004187 locus=Lus10004187.g ID=Lus10004187.BGIv1.0 annot-version=v1.0 MPASSSPPTTTNPPHPPPSSSSTLTPSSAAGRTSCQIIMQGIASRLSIKGFTAITFDMRGVGRSTGKSSVTGIFEIEDVVAVCTWVSENFPVERILLVGS SAGAPIAGSALDQLEKVVGYVSIGYPFGFAASFLFGKHYKPTLKSRKPKLFIMGSADWFTSVRQLKSKVKSCEGRAEMHLIQGAGHFELEGPDFDSAIVN MIVSFHETL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10004187 [exp]	0	1
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	3.2	0.7642
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10036716 [exp]	12.5	0.6663
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	15.5	0.6500
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10012271 [exp]	18.5	0.6171
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	18.7	0.6358
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	29.6	0.6430
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	33.8	0.6304
AT3G06890			unknown protein		Lus10006514 [exp]	43.6	0.6350
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028326 [exp]	49.2	0.5860
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	51.2	0.6054

Compare expression of checked genes

Lus10004187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.