Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 308 / 2e-102 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT3G12140 304 / 6e-101 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G06780 298 / 1e-99 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT2G44440 254 / 7e-81 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT5G20030 42 / 0.0004 Plant Tudor-like RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021038 [exp] 587 / 0 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10031223 [exp] 311 / 9e-103 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 293 / 2e-96 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031221 [exp] 286 / 1e-93 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 276 / 7e-90 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10000040 [exp] 205 / 1e-65 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10018749 [exp] 45 / 5e-05 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10024835 [exp] 45 / 6e-05 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10014715 [exp] 42 / 0.0005 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G047600 [exp] 358 / 1e-122 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 346 / 9e-118 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G013800 [exp] 322 / 7e-107 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 304 / 1e-100 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 302 / 1e-99 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 301 / 6e-99 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 285 / 2e-92 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 48 / 6e-06 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 45 / 5e-05 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 44 / 0.0001 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Lus10004188 pacid=23153326 polypeptide=Lus10004188 locus=Lus10004188.g ID=Lus10004188.BGIv1.0 annot-version=v1.0 ATGGAGGCCCAAATTCATCTCTTGGAGCAAGAAGCTTACTGTGCTGTACTGCGTGCTTTCAAGGCTCAATCTGATGCTCTTACCTGGGAAAAGGAGGGTT TAATTACAGAACTCCGCAAAGAGCTCAGGGTATCTGATGATGAACACAGAGAGCTTCTCTCCAGGGTTAATGAGGATGACATCATCCGCCGGATTAGGGA ATGGAGAACCACAGGTGTTCCTGAAGCTACCAGGTTCGGTGTGCCGCAGAGGGTTCATGAGATGATACCCAGCCCTACCATTTCGGCAGCTCGTAAGAAA CAGAAGACATCTCAAGGGAGTCAGCTGCTACCTACTCTATCCTCTGTGAAAGCTATGCAGCTTCCCTCTCAATTTACTACTCGAGCGAGGTACTTCACTA CCCATAACTCCCGTAACTCTTCTGGTGCGCTTGTGATTGATGAACCTCCGGAAGCACTGCTTGGACGAAAGGTGTGGACAAGATGGCCTGAAGACAATCA TTTCTATGAGGCCGGCCGGCATGCTCTTGTGTACGATATAGGTACAGAAAGTGAGACATGGGAATGGGTTGACCTGAATGAGATATCACCAGAGGACATA CGATGGGATGGAGAGGATCCGGCAATTAGCTATCACGGTGGTGGCCAAGGTGGCGCCAGTCGTGCGATTAGGAAACCCATGAATCGCGGTGTTTTTATTC CAAGTTCAGGACCATTGAGGGGATCTACAAAGTTCCCAGCCAGAAGGGACCATTTACTGACACACAATGGTTTTGCAGCGAAGGTTTCTGACGATATCGA ATTACTGAACACTGAGACACTAGTTAAAGAGGTTGAAAAGGTTTTCGGTGTAAGTCAACCAGATCCGCTTGAGCTTGAGAAAGCCAAAATGATGCTAAAA GAGCATGAACAGGCACTTATGGATGCAATTGCAAGGCTTGCAGATGCATCTGATGAAGAAAGTGGTAATTGCTATATCTCTATTTGTAGTTATCCCTACT CGTTAGGTTCTGTTTGCCTGGAGCTGAGAAGAGATGTTCATTCATTCCATTCCTGTTATATTATAGTGGCAACAACTGATTTTTTTTCGGACTTTAGCTA TGATTTTCCTCTGAACTATTACCAACTGCATTGTTATTGA
AA sequence Show only first row Show all	>Lus10004188 pacid=23153326 polypeptide=Lus10004188 locus=Lus10004188.g ID=Lus10004188.BGIv1.0 annot-version=v1.0 MEAQIHLLEQEAYCAVLRAFKAQSDALTWEKEGLITELRKELRVSDDEHRELLSRVNEDDIIRRIREWRTTGVPEATRFGVPQRVHEMIPSPTISAARKK QKTSQGSQLLPTLSSVKAMQLPSQFTTRARYFTTHNSRNSSGALVIDEPPEALLGRKVWTRWPEDNHFYEAGRHALVYDIGTESETWEWVDLNEISPEDI RWDGEDPAISYHGGGQGGASRAIRKPMNRGVFIPSSGPLRGSTKFPARRDHLLTHNGFAAKVSDDIELLNTETLVKEVEKVFGVSQPDPLELEKAKMMLK EHEQALMDAIARLADASDEESGNCYISICSYPYSLGSVCLELRRDVHSFHSCYIIVATTDFFSDFSYDFPLNYYQLHCY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	0	1
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	1.0	0.9074
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10018871 [exp]	1.4	0.9050
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	3.2	0.8940
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	3.5	0.8945
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	4.2	0.8946
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	4.5	0.8610
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	5.1	0.8664
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10043294 [exp]	5.1	0.8541
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	6.9	0.8767
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	6.9	0.8632

Compare expression of checked genes

Lus10004188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.