Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11840 286 / 4e-90 PUB24 plant U-box 24 (.1) AT2G35930 260 / 1e-80 PUB23 plant U-box 23 (.1) AT3G52450 249 / 2e-76 PUB22 plant U-box 22 (.1) AT1G66160 120 / 3e-29 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G19380 119 / 8e-29 PUB25 plant U-box 25 (.1) AT5G65920 115 / 2e-27 ARM repeat superfamily protein (.1) AT1G49780 111 / 3e-26 PUB26 plant U-box 26 (.1) AT5G37490 111 / 3e-26 ARM repeat superfamily protein (.1) AT3G49810 108 / 4e-25 ARM repeat superfamily protein (.1) AT5G09800 104 / 8e-24 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029395 [exp] 762 / 0 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10021267 [exp] 297 / 7e-95 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10013584 [exp] 297 / 1e-94 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10016166 [exp] 295 / 1e-93 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 287 / 1e-90 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10000800 [exp] 283 / 4e-89 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 278 / 5e-87 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10004095 [exp] 134 / 5e-36 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10013352 [exp] 125 / 1e-32 AT2G35930 212 / 6e-67 plant U-box 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202700 [exp] 431 / 4e-147 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 425 / 8e-145 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.009G016100 [exp] 323 / 5e-105 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.001G216300 [exp] 314 / 1e-101 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.016G069400 [exp] 296 / 2e-94 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.001G216100 [exp] 290 / 4e-92 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.006G202600 [exp] 286 / 8e-91 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 283 / 2e-89 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.014G101100 [exp] 189 / 9e-54 AT2G35930 266 / 3e-85 plant U-box 23 (.1) Potri.002G174500 [exp] 184 / 1e-51 AT2G35930 249 / 9e-79 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10004191 pacid=23175398 polypeptide=Lus10004191 locus=Lus10004191.g ID=Lus10004191.BGIv1.0 annot-version=v1.0 ATGGAGGAATCAGATAATCAAGAATTACCAGAGATTCCTCAATACTTCATATGCCCAATTTCTCTACAGATAATGAAGGATCCCGTGACGGCTGTCACCG GAATAACCTACGACAGGGAGAGCATCGAGCACTGGATCTTCACTCGCCGGAACACCACGTGTCCCGTCACCAAGCAGCCTCTCATCTCCGGCGGCCCCAA CGACTCGGTCCTCGATATAACCCCAAACCACACCCTCCGCCGCCTGATCCAGTCGTGGTGCACCTGTCACGGCCGTGATCGTCTTCCGTCGCCCAAACCG ATACTCGACCAGTTTCGGGTCGGTAAGTTGCTACGCGGGTTGTCCTCGGACCGGATTCTGGTTCTCCGTCAGCTCGAAGCGCTCGCTTCTGAGCACGAAC GGAATCGGAGGCATCTTGTTGATGCGGGCGTGCCCGATGCTATGTTTGGGATCGTGCTCGAGTCGTTCGATTCTCGCGATATCGGTGTCCTGGGGCTGAA AGAGGCGGTGAGGGTTCTCCATTTGATTCGTATCGGTTCGAGCGGGAGTAGAACGAAATTTTTACGAAATGGTCGGGTTATGGACTCGCTGACGTGGCTG ATGGGTTTTAATGGAACTAGGAAGGACGTCGACCATGTTACAATCCGGGGTAATGCCGTCTCTATTACGAGACTGCTTCTGGAAGAAGCGGGCCCAACTG TTTTAGAACGATTGAAGCCCGACTTTTTTAAAAAGATAGTAGAGTTCTTGAAAGAACGATCCCACAACAACCAACATGCGATCAACTCTGCATTGACCGT GATGCTGCAGGCTTCCCCTTGGGGGAAGAACCGCATTGCGATGGTGGAATCAGGTGCGGTGTTCGAGCTCTTGGAGCTTGAACTAGCCCTAACCGGTTCT TTAATAGAAAGCAAGAGGACGACAGAGTTAGTCTTCGGAGTTCTGTTCAACCTGTGTTGTTGCGCGGAAGGGAGAGCAGAGTTTTTGAAACACAGGGCAG GGATCGCCGCGGTCGCCAGGGTGATAATGAAGGTGTCACCGAAGGTTGACGAGAGGGCGGTGTTGATTCTGTCGTCGGTCTGCAAATTTTCGGGGACGAA TGTCGTCCTGCAGGAGATGCTGACTGTGAAGGCGGTCTCGAAGCTCTGCCTGCTCATGCAGGCGGACGCGACATCTTACTTGAAGGAGAAGGCCGCCGAG ATGTTGAGGATGTACTCCAGCGAGGAGTGGAAGAGCAATCCTTGCATGGATGCATGCTTATTGTCAAGGTATCAAAATCAAAGAAACGGTTGTATCACAG AAGATCGTTGCCCCACAATTAATCCCCACGTCAGCACAGTCTCGTCCACGTGCCTTCCTTCTGCTCCACCTCCTCCTTCTTCTTCTTCATCCCTCACCAA TCCTTCGTCTCTAGCGTCTCCACCCGATACAACCCCCGACGGCGGCAACCACCATCTCCTCCGCTGGTCCGCCCAATTTATTCAGCTTCCACTCACAACC CCTAATTTATCATCACATCTGGAACTCCGTCGACTTTGCAAAGCTATAGAAGATATTTGGAGAAGTCATAGTCGCAGGGAAAGTTGGGCGTATCCACGTA GTGCAGAGTGCTGCTCCACCAGTACCGTTGCCTCCAAATCCACAAACTCCCTAAACGCAATCTCCCACATCACCAGGCTATTATTCCCCTTTCGATTAAC AGTCATCCAGACTCAAATTGGCACAACAGGAGCGTTGAACTCTACGACAAAATTTGTTACTGAGCTGCGATTTCAACGGCCTTCCGTCAACCGGGTCCAT CCTTTGCTCGAATGA
AA sequence Show only first row Show all	>Lus10004191 pacid=23175398 polypeptide=Lus10004191 locus=Lus10004191.g ID=Lus10004191.BGIv1.0 annot-version=v1.0 MEESDNQELPEIPQYFICPISLQIMKDPVTAVTGITYDRESIEHWIFTRRNTTCPVTKQPLISGGPNDSVLDITPNHTLRRLIQSWCTCHGRDRLPSPKP ILDQFRVGKLLRGLSSDRILVLRQLEALASEHERNRRHLVDAGVPDAMFGIVLESFDSRDIGVLGLKEAVRVLHLIRIGSSGSRTKFLRNGRVMDSLTWL MGFNGTRKDVDHVTIRGNAVSITRLLLEEAGPTVLERLKPDFFKKIVEFLKERSHNNQHAINSALTVMLQASPWGKNRIAMVESGAVFELLELELALTGS LIESKRTTELVFGVLFNLCCCAEGRAEFLKHRAGIAAVARVIMKVSPKVDERAVLILSSVCKFSGTNVVLQEMLTVKAVSKLCLLMQADATSYLKEKAAE MLRMYSSEEWKSNPCMDACLLSRYQNQRNGCITEDRCPTINPHVSTVSSTCLPSAPPPPSSSSSLTNPSSLASPPDTTPDGGNHHLLRWSAQFIQLPLTT PNLSSHLELRRLCKAIEDIWRSHSRRESWAYPRSAECCSTSTVASKSTNSLNAISHITRLLFPFRLTVIQTQIGTTGALNSTTKFVTELRFQRPSVNRVH PLLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10004191 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034229 [exp]	1.0	0.9883
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	1.7	0.9875
AT3G62650			unknown protein		Lus10017613 [exp]	2.8	0.9859
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	3.7	0.9883
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	5.7	0.9813
AT4G22030			F-box family protein with a do...		Lus10020029 [exp]	6.9	0.9784
AT4G04480			unknown protein		Lus10020028 [exp]	9.2	0.9773
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	10.2	0.9744
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	11.5	0.9754
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	11.5	0.9841

Compare expression of checked genes

Lus10004191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.