Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52460 92 / 3e-22 hydroxyproline-rich glycoprotein family protein (.1) AT3G11660 61 / 3e-11 NHL1 NDR1/HIN1-like 1 (.1) AT3G52470 56 / 1e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 56 / 1e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 52 / 4e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 52 / 6e-08 NHL22 NDR1/HIN1-like 22 (.1) AT2G35980 49 / 4e-07 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06330 49 / 5e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27260 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G05220 47 / 4e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021284 [exp] 162 / 9e-49 AT3G52460 164 / 1e-48 hydroxyproline-rich glycoprotein family protein (.1) Lus10029396 [exp] 105 / 4e-28 AT3G52460 46 / 4e-06 hydroxyproline-rich glycoprotein family protein (.1) Lus10034173 [exp] 65 / 2e-12 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043411 [exp] 64 / 3e-12 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 62 / 1e-11 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10005216 [exp] 60 / 1e-10 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 59 / 1e-10 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10004202 [exp] 57 / 1e-09 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10029406 [exp] 56 / 3e-09 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204000 [exp] 88 / 9e-21 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G071200 [exp] 77 / 5e-17 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G218300 [exp] 62 / 2e-11 AT2G27260 94 / 6e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 56 / 3e-09 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 54 / 9e-09 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 53 / 2e-08 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.012G145500 [exp] 51 / 1e-07 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.009G020000 [exp] 50 / 1e-07 AT3G52460 48 / 5e-07 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G180000 [exp] 50 / 1e-07 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204200 [exp] 49 / 4e-07 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004193 pacid=23175391 polypeptide=Lus10004193 locus=Lus10004193.g ID=Lus10004193.BGIv1.0 annot-version=v1.0 ATGCCTGATTCGCCGAAGAAACACAAACATTCGTCTTCCTCCTCCTCCAGCGACGATGAAGAAAGCCACCGCCGCCGTCATCAACACCAACCTCCGTTGC CGGAGCAGCAGCACCCTCCTACCGGCTACCCTCCTCCATACCCACCGGGTGGACACGAATACCCGCCACCCAATTACAACTACAACGGTAATTACCCGCA GGCCCAAGCGCCACCGGCGGTGTACTACAACCACACCGGGTACCCGAACCAGGAGGAGCTGAACGCTGCCGCGTCGTTCGCCAGAGGATTCTTGATCGGG ATGATGATCCTTTTCTTCTTGATATTCCTATCCACCATCGTCTTATGGGCGGTGCTCCGGCCTGAACTCCCCGAGTTCTGGGTCGAATCCCTGACCGTGG CGAAATTCGACGCCAAGCCGTCCAGCTTCGCGGCGACATGGCAGGCGAACTTGACGGCGAAGAATCCGAACAAGAAGATCGCGCTCTTCTTCAGCAGGAT AGAGACGTTCATGTTCTTTGAGCGGCAGGCGCTGGCGGACTCGTTCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGTTGTTCTCGGAGTAGTTGAA GATCCAGTTCGTTGGGGCTACAGGCGGTGGGAGCTTGGATCCCGACTGTAA
AA sequence Show only first row Show all	>Lus10004193 pacid=23175391 polypeptide=Lus10004193 locus=Lus10004193.g ID=Lus10004193.BGIv1.0 annot-version=v1.0 MPDSPKKHKHSSSSSSSDDEESHRRRHQHQPPLPEQQHPPTGYPPPYPPGGHEYPPPNYNYNGNYPQAQAPPAVYYNHTGYPNQEELNAAASFARGFLIG MMILFFLIFLSTIVLWAVLRPELPEFWVESLTVAKFDAKPSSFAATWQANLTAKNPNKKIALFFSRIETFMFFERQALADSFDXXXXXXXXXEVVLGVVE DPVRWGYRRWELGSRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52460			hydroxyproline-rich glycoprote...		Lus10004193 [exp]	0	1
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	10.5	0.8784
					Lus10031880 [exp]	11.3	0.8775
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037662 [exp]	17.0	0.8629
					Lus10027563 [exp]	17.5	0.8344
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10041437 [exp]	19.2	0.8112
AT3G53630			unknown protein		Lus10025312 [exp]	28.2	0.8703
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10035914 [exp]	32.4	0.8544
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	41.4	0.8707
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10024358 [exp]	44.7	0.8647
AT1G04910			O-fucosyltransferase family pr...		Lus10030093 [exp]	45.9	0.8338

Compare expression of checked genes

Lus10004193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.