Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06350 429 / 2e-135 ARM repeat superfamily protein (.1) AT5G27010 366 / 6e-112 ARM repeat superfamily protein (.1) AT1G07840 210 / 7e-61 Sas10/Utp3/C1D family (.1.2.3) AT4G04680 168 / 1e-46 unknown protein AT2G43650 62 / 2e-09 EMB2777 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029399 [exp] 1250 / 0 AT5G06350 675 / 0.0 ARM repeat superfamily protein (.1) Lus10029397 [exp] 530 / 0 AT1G07840 248 / 7e-81 Sas10/Utp3/C1D family (.1.2.3) Lus10012061 [exp] 54 / 6e-07 AT2G43650 400 / 2e-131 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) Lus10027922 [exp] 54 / 7e-07 AT2G43650 385 / 1e-124 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G095700 [exp] 535 / 9e-176 AT5G06350 753 / 0.0 ARM repeat superfamily protein (.1) Potri.001G208900 [exp] 530 / 3e-174 AT5G06350 756 / 0.0 ARM repeat superfamily protein (.1) Potri.005G152200 [exp] 264 / 3e-80 AT1G07840 298 / 9e-101 Sas10/Utp3/C1D family (.1.2.3) Potri.011G096201 [exp] 77 / 1e-16 AT5G06350 51 / 1e-08 ARM repeat superfamily protein (.1) Potri.013G125800 [exp] 62 / 1e-09 AT2G43650 401 / 6e-131 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12333 [flax] [poplar] Ipi1_N Rix1 complex component involved in 60S ribosome maturation PF04000 [flax] [poplar] Sas10_Utp3 Sas10/Utp3/C1D family
Representative CDS sequence Show only first row Show all	>Lus10004194 pacid=23175384 polypeptide=Lus10004194 locus=Lus10004194.g ID=Lus10004194.BGIv1.0 annot-version=v1.0 ATGCCTAAAAGCAAGGCTTCTTCAAAGAAGCAGCAAAAGCGCGGGATTGACTTCAAGAAAATAAAAAGGAAGATCGGCAGGAAGTTGCCGCCGGCGAAGA ACACCACGAACACTGAAGTTAAATCGAAAGCTATTGTTCTCCCTGAGCAGAGTGTGGCATCGGATAAAGCAGGCTTGGCTGTAAACAAGAAAGGGTTGAC ATTGAAAGAGCTTCTACAACAAACATCCCATCACAATGCCAAAGTTCGTAAAGATGCATTATTGGGCATGAGAGATTTGCTCCTCAAGTTCCCGGCGGAA TTGAAGTCACACAGATATGCTGTGATAGAGAAGTTACGTGAACGCATCAGTGATGATGATAAAATTGTTCGAGAAAATCTATATCAATTACTCAAGTCAG TTATCTTGCCTGCCTGTCAAGAGGATAGTCACGGACCTTTCGTATCTATGATGATGGCTTACATTTTCAATGCTATGACACATTTGGCAATTGATGTTCG GCTGATGGCTTTCAAGTTTTTCAATCTCATTGTTCAATATCATCCAGATGCTTTTTTTATGCATGCTGAAAAGATCTTACAAAACTATGAAACTATTCTG AGGAGCAACCAGTTTGATCTGCAATACAAGACCAAGCTCATGAATGTTCTTACTGGATTAGTATGCTGCTTGTCCCTGTTGCCATCTGAAAAGAAAGAAG TTACTGCATCCGGACAGGATTCTGTCACCCCGGAAGTACTTCATGCTTTCGAACCAGATAAACCTACTGAATCTGCTGAATTGTCCATCATTGACAAAAA ACTGAAGGAACTTTTGCCAGTACTGCTCAGCTGCTTTCAAGACTTCATTCCATCAACTCAAGGCATGACCCGGCTAGATACACAATCATTTGATTGCATG TTTAGCATTCTGCAAAGCATAGTTCTTGCTGTTAGGTTCTTTATTTATAGGATCGTCAAGGATAACTTGGACTTACAGTGTCTTGATGGAAGTCACGAGG TGCCTTTATGGGATCATAGGATCTCGCCAATAGTAAATAAGTTGTTAGGTCTGTTTCCGCTGAACTCAACACGTGACCTCTCAGGAAAGGATGATGATAG ATGTTTCATCTTGAACATTCAAATTACCGAGATATTTCTGTGCACAAACGAGTATATGGAGCCTTCTCCTGACTTGTCCATAAAATATCTGACATTTATG GAAAATGTACTAAAGGTCAGTGATAAAGATTCTAGCAAAACAGGTAGGGAAAAGCAGATGCTTCCACTGATTCCTTTTCTCCCGAAGCTTGTTTCACAAG TTACAGAGCACTGGAAAGCTCAGCTTCTTCAGAGAGAAGACGGGTGGTTCCTGAATGCAAGTGATTCAGCACTTTTGAACTGTCAGTTTAGTTGGATGAG AAAGCTTCCTCAACTGTTAATTCAGCTCGGCGATAGGCACCCCTCATCTTCCCAGGTTGTGTTGCGCCACAAGTTGGATGAATTATTGATTCTCCGGATG ATAGAGGTTCTGGATTCTTCTTATTGTGCTGGCCATATTCAGATCAGAGACCATGTTAGCTTCCTCGTGACTTTGTTATTCCGTTTTGTAGCATCACCTG CAAGTATTAGTTATTCCATGGAGACTGACGCAACGGCTAATAATCATGGAATCTTAAAGTCCATGACCAGTGCTATTAGTACCTGCCTGTCACAGTTGGG GGACAAGTCTCTAGTTTTCCTTTTGCTGGAAGGAGTGATAACGGAGCAATTGTCATCGAAGCCATCTTTACACAACGCTTGTGCTATGCTTAGAGTGCTG GTTGTGCTAGATTCCAAACCCACGAAACTTTCCGAACAAAGCATCTTGTGTCTAGGCAACTATCTTGCAGGATACCTGATTGATGTCGTACAGAATATCC AAGAAGAAGGTGACTACGTTGAAGCATCGTGTTATTATCTCCTGCCGTGTTTTTTCATGTTCGACAGGAGTCACAGGCTTCTGGACCTAGTATTGATGGC GATGGCATCACTGGTACAGGAGCACACCACATCTGTTTCGTCCAGCAACAATTCCGGTTCAAGGCTCTCGAGTAAGATAGTGAGCATTGTTGAGGTCTTA CTCCTGATGCATCGAGAAGCCAAGATCTGGAGACTGGTTTGTTCATCCAAGTACGCCGTGGCCCATATTCTGCAAAGTATACAGTCACTGCTGGTAAAAG ATAATAAGTATCCAACTGCTGATGGAATGAGCTATCTAGAAGCCAAACATTTGTTACTCATACAATATTGTCAATCGTTAGTGTTTATCATGCTCCGCAA AGCGAAAGGCTTGTCAATTCAGAATCATCCTGTTGTTCAAAGCCTTGTTGAGACAAGATTGTTTCTGGAGAAGGTGCAAAAGATAGACAAAAAGCTTGAT TATCAAATTAAAAAGCTTATAACGGATGCTTCACGCCCTCCTCTGAATCAAGTCAATGCAGCTGAAGAGAGCAATATGGATGCTGCTGATGATAATCTGG AGGATCATTTGAAGTTTCGTCCGAACCCGGATATGCTTATTAGTAACATACCAGATGTTGATGGTGCTGCTGGTAAATATAAACATCCGAGATTTGCCCC AGTGACAATGGAAGATAATGACAAGAAAACAAGGGAGAAAAGGAATGCTTTGAGAAAAGATAAAGACATTGACAAACGATCGAAACAGGGGTACACGAAA GAAATATTCGACGACCTGCAAGGGAAACCAGAAGAGGTTAAAGAAACTTATGGACATGATAGTAGGGAATTCGAAAAGTATCAGAGAGATTATGACGAAC GTCAAAAGCAGGAAGAAGAAACTTTCACCCGTGGTAATATTAGCAAGGCAGAGAAGAGAAAGTTGAGACAGTTGAAGAAGTCGAGAGGAGGGTTGCTTGG TGTGACTGACGATTTCTATGACGATGTGAAATCATTACCATTGTTTGATGGTGCTGGAGAAGAAGAAAAAAGGGGAAGTAGCAGTCGTGGAATGGGGAAG CAGAACAAACGCAAGTAG
AA sequence Show only first row Show all	>Lus10004194 pacid=23175384 polypeptide=Lus10004194 locus=Lus10004194.g ID=Lus10004194.BGIv1.0 annot-version=v1.0 MPKSKASSKKQQKRGIDFKKIKRKIGRKLPPAKNTTNTEVKSKAIVLPEQSVASDKAGLAVNKKGLTLKELLQQTSHHNAKVRKDALLGMRDLLLKFPAE LKSHRYAVIEKLRERISDDDKIVRENLYQLLKSVILPACQEDSHGPFVSMMMAYIFNAMTHLAIDVRLMAFKFFNLIVQYHPDAFFMHAEKILQNYETIL RSNQFDLQYKTKLMNVLTGLVCCLSLLPSEKKEVTASGQDSVTPEVLHAFEPDKPTESAELSIIDKKLKELLPVLLSCFQDFIPSTQGMTRLDTQSFDCM FSILQSIVLAVRFFIYRIVKDNLDLQCLDGSHEVPLWDHRISPIVNKLLGLFPLNSTRDLSGKDDDRCFILNIQITEIFLCTNEYMEPSPDLSIKYLTFM ENVLKVSDKDSSKTGREKQMLPLIPFLPKLVSQVTEHWKAQLLQREDGWFLNASDSALLNCQFSWMRKLPQLLIQLGDRHPSSSQVVLRHKLDELLILRM IEVLDSSYCAGHIQIRDHVSFLVTLLFRFVASPASISYSMETDATANNHGILKSMTSAISTCLSQLGDKSLVFLLLEGVITEQLSSKPSLHNACAMLRVL VVLDSKPTKLSEQSILCLGNYLAGYLIDVVQNIQEEGDYVEASCYYLLPCFFMFDRSHRLLDLVLMAMASLVQEHTTSVSSSNNSGSRLSSKIVSIVEVL LLMHREAKIWRLVCSSKYAVAHILQSIQSLLVKDNKYPTADGMSYLEAKHLLLIQYCQSLVFIMLRKAKGLSIQNHPVVQSLVETRLFLEKVQKIDKKLD YQIKKLITDASRPPLNQVNAAEESNMDAADDNLEDHLKFRPNPDMLISNIPDVDGAAGKYKHPRFAPVTMEDNDKKTREKRNALRKDKDIDKRSKQGYTK EIFDDLQGKPEEVKETYGHDSREFEKYQRDYDERQKQEEETFTRGNISKAEKRKLRQLKKSRGGLLGVTDDFYDDVKSLPLFDGAGEEEKRGSSSRGMGK QNKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	0	1
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	2.0	0.9029
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	2.2	0.8955
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	3.9	0.9005
AT1G50910			unknown protein		Lus10043058 [exp]	4.6	0.8764
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	5.2	0.9058
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	6.5	0.8576
AT3G47630			unknown protein		Lus10024227 [exp]	7.7	0.8570
AT4G04190			unknown protein		Lus10020577 [exp]	7.7	0.8516
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	9.8	0.8956
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	10.5	0.8350

Compare expression of checked genes

Lus10004194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.