Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06340 236 / 2e-78 ATNUDX27 nudix hydrolase homolog 27 (.1) AT3G10620 221 / 6e-73 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 172 / 3e-54 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT5G47650 49 / 6e-07 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 46 / 1e-05 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47240 44 / 5e-05 ATNUDT8 nudix hydrolase homolog 8 (.1) AT2G04450 43 / 0.0001 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT4G12720 41 / 0.0004 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029398 [exp] 477 / 4e-173 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10021279 [exp] 253 / 5e-85 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 251 / 2e-84 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 243 / 3e-81 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 223 / 3e-73 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10018988 [exp] 222 / 5e-73 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10033839 [exp] 207 / 8e-67 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10003714 [exp] 172 / 4e-54 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 154 / 2e-42 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203700 [exp] 254 / 3e-85 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 252 / 1e-84 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.008G017900 [exp] 218 / 2e-71 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.010G242100 [exp] 212 / 3e-69 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G130100 [exp] 184 / 5e-59 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 182 / 3e-58 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.016G006000 [exp] 52 / 1e-07 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 49 / 8e-07 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 44 / 6e-05 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 43 / 0.0001 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10004195 pacid=23175416 polypeptide=Lus10004195 locus=Lus10004195.g ID=Lus10004195.BGIv1.0 annot-version=v1.0 ATGTGGTCGTCGTCGTCGTGTGAGGTTATCGGAAGAAGTTCGCAAGTTTACGTCGTCAGTGGTGGCGAAGGTCGATACTTCCGTTCGAATTCCACCAAAT TTACGCGAGTGCCATCGGTTTCCTGCTGCAAGAGTCAAAATCTCTGCAATTCCTCTGGTTTAGTATCGGCAGGGACAGCCAACAATGGGGCGTCCACAAT AATCACGAAGAAGCCTCCTCGTGGGTATCGGAGAAACGTTGGAATTTGTCTCGTTAATCCCTCCAAAATGGTTTTCATGGCGTCGAGGGTACACAACACA GGTTTGTGGCAAATGCCTCAGGGTGGTGCGAACGAGGGCGAAGATCTCCGGAGTGCGGCCATGAGAGAGTTGCAAGAGGAAACAGGTGTTACTTCAGCTG AGTTTCTAGCCGAGGCACCCTATTGGATGAGTTATGATTTCCCACTACATAAGAGAGAAATGGTTAATCGGAGATGGGGTACAAACTATAAGGGGCAAGC TCAAAAATGGTTTCTTTTCAAGTTTACTGGAAAGGAGGAAGAGATAAACATTTCCGGCGATGGATCTGAAACGCCTGAATTCAAGCACTGGTCATGGATA CTAGCAGATCAAGTGGTTGAATTTGCTATGGATTTCAAGAAGGAAGACTATCGAGAAGTCATGGAGTTGTTCAGTCCATATCTGAAGAACTATTTTGATT CAGAGCTGCAAAAGCCGGTACGCTGTAAAAGGTAG
AA sequence Show only first row Show all	>Lus10004195 pacid=23175416 polypeptide=Lus10004195 locus=Lus10004195.g ID=Lus10004195.BGIv1.0 annot-version=v1.0 MWSSSSCEVIGRSSQVYVVSGGEGRYFRSNSTKFTRVPSVSCCKSQNLCNSSGLVSAGTANNGASTIITKKPPRGYRRNVGICLVNPSKMVFMASRVHNT GLWQMPQGGANEGEDLRSAAMRELQEETGVTSAEFLAEAPYWMSYDFPLHKREMVNRRWGTNYKGQAQKWFLFKFTGKEEEINISGDGSETPEFKHWSWI LADQVVEFAMDFKKEDYREVMELFSPYLKNYFDSELQKPVRCKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10004195 [exp]	0	1
AT1G77122			Uncharacterised protein family...		Lus10018923 [exp]	3.7	0.7936
AT1G36390			Co-chaperone GrpE family prote...		Lus10024760 [exp]	19.0	0.7600
AT4G34180			Cyclase family protein (.1)		Lus10031454 [exp]	29.5	0.7116
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10030535 [exp]	32.7	0.7639
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	42.4	0.7584
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	49.8	0.7437
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	53.3	0.6939
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	68.8	0.6766
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10034952 [exp]	77.6	0.7042
					Lus10029579 [exp]	81.2	0.7115

Compare expression of checked genes

Lus10004195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.