Plant FIBer expression Database

Lus10004196 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38495 166 / 2e-54 unknown protein
AT2G36740 41 / 5e-05 ATSWC2 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029400
[exp]
131 / 7e-41 AT4G38495 100 / 4e-29 unknown protein
Lus10020396
[exp]
42 / 3e-05 AT2G36740 411 / 1e-143 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G127200
[exp]
203 / 4e-69 AT4G38495 167 / 1e-54 unknown protein
Potri.001G412800
[exp]
44 / 8e-06 AT2G36740 350 / 7e-120 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08265 YL1_C YL1 nuclear protein C-terminal domain
Representative CDS sequence
>Lus10004196 pacid=23175408 polypeptide=Lus10004196 locus=Lus10004196.g ID=Lus10004196.BGIv1.0 annot-version=v1.0
ATGGAACCAGTGGTAGTAAACGCCGAGCTGGTGCTGCCAACGCATCTGAGCTTCAAGAAGATACAGATGTACGACAAGTACCCCAAAGGTCAATCCAGAG
GCCGCCATTGGAAGCACTTGAAGCAGATTCTTCAAGCTGAGAATTTTCAGAACTACCCTCTTAATGAACCTAATTATGTTAATATCGAATCGCCACCATC
CATGCACCCGTCAAAGAAGATTTGCGACATTACAGGATTCGAGGCGCTTTATGTGGATCCGAGGACGAACCTGCGGTATGCAAACACGGAGGTGTTCAAG
CAAATAAGGGGGTTTCCTAATGAATATGTGCAGAGGTATCTGGCTCTGAGGAATGCTGCAGTTGTTCTGAAATAG
AA sequence
>Lus10004196 pacid=23175408 polypeptide=Lus10004196 locus=Lus10004196.g ID=Lus10004196.BGIv1.0 annot-version=v1.0
MEPVVVNAELVLPTHLSFKKIQMYDKYPKGQSRGRHWKHLKQILQAENFQNYPLNEPNYVNIESPPSMHPSKKICDITGFEALYVDPRTNLRYANTEVFK
QIRGFPNEYVQRYLALRNAAVVLK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G38495 unknown protein Lus10004196
[exp]
0 1
AT3G57990 unknown protein Lus10004184
[exp]
1.4 0.7605
AT5G23050 AAE17 acyl-activating enzyme 17 (.1) Lus10027257
[exp]
4.9 0.7496
AT1G66140 C2H2ZnF ZFP4 zinc finger protein 4 (.1) Lus10013243
[exp]
5.2 0.7218
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Lus10012352
[exp]
7.5 0.6885
AT2G37975 Yos1-like protein (.1) Lus10017192
[exp]
22.0 0.6877
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Lus10012487
[exp]
24.1 0.6942
AT1G02290 unknown protein Lus10018907
[exp]
25.8 0.7013
AT2G19810 C3HZnF AtOZF1 Oxidation-related Zinc Finger ... Lus10012922
[exp]
26.1 0.6758
AT5G65940 CHY1 beta-hydroxyisobutyryl-CoA hyd... Lus10038717
[exp]
26.2 0.6731
AT1G57790 F-box family protein (.1) Lus10017027
[exp]
27.4 0.6913

Lus10004196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.