Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34160 505 / 6e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 312 / 1e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G40405 298 / 4e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 293 / 1e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 288 / 7e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47530 285 / 2e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G01510 285 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 280 / 3e-87 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G41080 278 / 8e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 280 / 4e-86 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029401 [exp] 903 / 0 AT1G34160 674 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 297 / 7e-94 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 296 / 6e-93 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 286 / 2e-89 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020743 [exp] 279 / 4e-86 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 277 / 1e-85 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041326 [exp] 276 / 1e-85 AT3G56550 702 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 277 / 2e-85 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 276 / 2e-85 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199800 [exp] 672 / 0 AT1G34160 702 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 324 / 8e-104 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 308 / 6e-98 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 306 / 5e-97 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 303 / 3e-95 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 302 / 8e-95 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 298 / 6e-94 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 296 / 3e-93 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 300 / 1e-92 AT3G22690 582 / 0.0 unknown protein Potri.003G074500 [exp] 294 / 3e-92 AT3G47530 750 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004197 pacid=23175410 polypeptide=Lus10004197 locus=Lus10004197.g ID=Lus10004197.BGIv1.0 annot-version=v1.0 ATGGCTAGCAGCTCAGTGCTGGAATATCTGCTACCGAAGTGCACCTCACTCTCCCACGGTAAGCAACTCCAAGCTATCCTCCTCACCACCGGCCAATTCA ACTTCCTCAACATCGGCCCACCTCGCTCCAAGCTCCTCGAGCTCTACTTCTTATCGCTCAACAATCTCTCCTTCGCCATCCGCATCTTCTCCCAAATCCC TAATCCTTCAACCAACGACTGGAACGCCATCCTCCGAGGCCTCATAGTCAGCCCTTCCCCTTCCGACGCCTTCCTATGGTACAGAACCATGCTCCGAGGT TCCCACAGAGTCGACGCCTTAACTTGCTCATTCGTCCTCAAAGCTTGCGCTCGCGTTCTGGCATTGTCCGAGTCGATTCAGATCCACTCACAGATAACAC GCCGTGGGTTCATCGCCGATGCTTTGTTAGGCACAACTCTGTTGGACTTGTACGCCAAAGGAGGAGAAATCAGGAATGGACATAAAGTGTTCGACGAAAT GTCTAAAAGAGACATTGCGTCGTGGAACGCGTTGGTATCCGGGTTGGCGCAAGGTGAAGAGCCGGATGAGGCTTTGAGTTTGTTTAAGAGGATTGGAAAT GATGGATTCAAGCCGAATGAGATCACTGTTCTTGGTGCTCTCTCTGCTTGTTCACAGCTTGGTGCTTTCAAAGAAGGTGAACAAATCCACGAGTATATAA GAAATGAAAAGCTGGACAGGAATTCTCAGGTGTGCAATGCTGTGATCGACATGTACACTAAATGCGGATTCATAGAGAAAGCTTATTCGGTTTTCACGAC AATGACTTGTGACAAGAGTCTTGTTACTTGGAACACCATGATCATGGCTTTCGCAATGAAGGGCGATTCCAACAAGGCTCTCGAACTTTTTCGTAAAATG GGTCCTTCCGGGATGGACCCTGATGAACATTACGGTAGTGTTGTCGATTTGCTAGGTCGAGCCGGACGACTCCAGCAGTCGTATGATGTGATTAACTCGA TGCCAATCGTAACGGATATGGTCCTATGGCAGACATTGCTCGGCGCTTGCAAGACTTACAAGAACGTCGAGATGGCTGAGATCCTGACGAGGAAGCTGGT GGAGATGGGGTCCAACAGCAACGGGAACTTCGTTCTTTTGTCGAACATTTACGCATCGCACGAGGGGTGGGCGGATGTCGGAAGGGTGAGGCAAGTGATG AAGAACAAAGATGTGAAGAAGATTCCTGGGCTTAGCTACATTGAGGCAAAGGGAGTGATCCATAAGCTCTACAATGGTGATAAGAGGCATGATGATTGGA TGAAGATATATGATAAGTTGGAGGAGATGAGGTTTAGGATGAAGGAGTTTGGTTACGTGGCGGAGACGAGCTTCGTGTTGCATGATATAGGAGAGGAAGA GAAGGAGAATGCTCTGTGTTTACACAGTGAGAAGCTGGCTGTGGCTTTTGGTTTGGTGTGTGCTGAGGAAGATGGGATGCCGATTCAAGTGATTAGAACC TTAGGATTTGTGGTGATTGTCATGTGGTGA
AA sequence Show only first row Show all	>Lus10004197 pacid=23175410 polypeptide=Lus10004197 locus=Lus10004197.g ID=Lus10004197.BGIv1.0 annot-version=v1.0 MASSSVLEYLLPKCTSLSHGKQLQAILLTTGQFNFLNIGPPRSKLLELYFLSLNNLSFAIRIFSQIPNPSTNDWNAILRGLIVSPSPSDAFLWYRTMLRG SHRVDALTCSFVLKACARVLALSESIQIHSQITRRGFIADALLGTTLLDLYAKGGEIRNGHKVFDEMSKRDIASWNALVSGLAQGEEPDEALSLFKRIGN DGFKPNEITVLGALSACSQLGAFKEGEQIHEYIRNEKLDRNSQVCNAVIDMYTKCGFIEKAYSVFTTMTCDKSLVTWNTMIMAFAMKGDSNKALELFRKM GPSGMDPDEHYGSVVDLLGRAGRLQQSYDVINSMPIVTDMVLWQTLLGACKTYKNVEMAEILTRKLVEMGSNSNGNFVLLSNIYASHEGWADVGRVRQVM KNKDVKKIPGLSYIEAKGVIHKLYNGDKRHDDWMKIYDKLEEMRFRMKEFGYVAETSFVLHDIGEEEKENALCLHSEKLAVAFGLVCAEEDGMPIQVIRT LGFVVIVMW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	0	1
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	1.4	0.8330
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	3.2	0.8320
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	3.5	0.8080
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	7.3	0.7556
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10010736 [exp]	7.7	0.7520
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	7.9	0.7796
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	10.0	0.7832
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	10.2	0.7925
AT5G09995			unknown protein		Lus10035858 [exp]	11.2	0.7752
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	15.0	0.7410

Compare expression of checked genes

Lus10004197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.