Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06370 172 / 2e-53 NC domain-containing protein-related (.1) AT4G00905 130 / 2e-37 NC domain-containing protein-related (.1) AT1G01225 127 / 6e-36 NC domain-containing protein-related (.1) AT3G02700 104 / 2e-27 NC domain-containing protein-related (.1) AT5G16360 83 / 6e-19 NC domain-containing protein-related (.1) AT5G16330 77 / 3e-17 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029402 [exp] 232 / 5e-77 AT5G06370 410 / 3e-146 NC domain-containing protein-related (.1) Lus10030231 [exp] 125 / 2e-35 AT1G01225 360 / 1e-126 NC domain-containing protein-related (.1) Lus10005981 [exp] 124 / 1e-34 AT1G01225 360 / 8e-127 NC domain-containing protein-related (.1) Lus10010962 [exp] 114 / 5e-31 AT3G02700 268 / 8e-91 NC domain-containing protein-related (.1) Lus10031362 [exp] 56 / 6e-10 AT3G02700 69 / 6e-18 NC domain-containing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203300 [exp] 187 / 1e-59 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.014G101300 [exp] 130 / 2e-37 AT1G01225 352 / 2e-123 NC domain-containing protein-related (.1) Potri.002G174700 [exp] 128 / 2e-36 AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) Potri.017G142300 [exp] 124 / 3e-35 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.004G078700 [exp] 122 / 3e-34 AT3G02700 343 / 3e-120 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF04970 [flax] [poplar] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004198 pacid=23175414 polypeptide=Lus10004198 locus=Lus10004198.g ID=Lus10004198.BGIv1.0 annot-version=v1.0 ATGGGTCTGCTTTCCAATAGGGTTCCGAAGGAGAGTCTTAAGCCAGGGTATCACATCTATTCATGGAGAACTGCTTATGTTTACGCCCATCACGGGAAGG AGGTAATGGAGTCGTCCTCTCCTGCCTCGACTGCTTCCTCTCCGGTGGAATCCTGTACCGCTTCGAGTATGCCGTCACGACAGCTCTCTTCCTCGCAAAA GCTCGCGGCGGAACTTGCACTCTCAGACCCTGACGATGTAGTCATCCACCGAGCAAAGTTCCTCCAGGAGAACGGGTTCGGATGCTACAACGTGTTCAAG AACAACTGCGAGGATTTCGCTATCTACTTCAAGATGGGGCTTCTTGTTGTGGATCAGACGACTATGAGGCAGAGTGGTCAGGCTGTGTCGATCATTGGTG GCCCTCTTGCCGCAGTGCTGTCTACTCTGCGGTTGCTTACCACCAATGTCTATGGTATGGCCGCAACTGCCGTTAGTGTGTACTGTGTTAGTAGGTATGC TGCTGATATTGGCATGAGGAAAGATGTGGTGAAGGTTGTCGAACCGCGGATTGTGGCCTCCGCCGCTCCATTGCTGGAGAGTAGTCAGAGACGGCAGATC ACCAGCTCTTGA
AA sequence Show only first row Show all	>Lus10004198 pacid=23175414 polypeptide=Lus10004198 locus=Lus10004198.g ID=Lus10004198.BGIv1.0 annot-version=v1.0 MGLLSNRVPKESLKPGYHIYSWRTAYVYAHHGKEVMESSSPASTASSPVESCTASSMPSRQLSSSQKLAAELALSDPDDVVIHRAKFLQENGFGCYNVFK NNCEDFAIYFKMGLLVVDQTTMRQSGQAVSIIGGPLAAVLSTLRLLTTNVYGMAATAVSVYCVSRYAADIGMRKDVVKVVEPRIVASAAPLLESSQRRQI TSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10032101 [exp]	1.0	0.9006
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	1.4	0.8962
AT3G50140			Plant protein of unknown funct...		Lus10037762 [exp]	2.2	0.8903
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	4.2	0.8945
AT4G27610			unknown protein		Lus10043458 [exp]	4.6	0.8876
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	4.6	0.8700
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	6.0	0.8891
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10015459 [exp]	6.9	0.8526
AT5G43950			Plant protein of unknown funct...		Lus10022871 [exp]	9.9	0.8616
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	10.7	0.8676

Compare expression of checked genes

Lus10004198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.