Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11670 966 / 0 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) AT4G00550 540 / 0 DGD2 digalactosyl diacylglycerol deficient 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021273 [exp] 1156 / 0 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029403 [exp] 984 / 0 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 562 / 0 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10040927 [exp] 513 / 6e-174 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10009820 [exp] 400 / 7e-131 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10029404 [exp] 357 / 7e-118 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10033686 [exp] 202 / 2e-60 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004199 [exp] 52 / 1e-08 ND 42 / 2e-11
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070200 [exp] 1078 / 0 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 1054 / 0 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G079400 [exp] 528 / 8e-180 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10004200 pacid=23175381 polypeptide=Lus10004200 locus=Lus10004200.g ID=Lus10004200.BGIv1.0 annot-version=v1.0 ATGCTTGAGGGGTTTAAGAACAGTGAGCTTGTGGAGAAGGTGAAATCTAGCTTGAAATCAATTCGGAAGGAGCCATATGAGTCACAGGTTAGCTCACCCT ATGTACGACCACCCGAAGTACCGCCACTTGACGTACCTGAACTCTTGGCAAGTTTGGTAAAGCAGTCTGGGCCATTTTTGGATCAGCTTGTAGTCAAAAA AGGCAATAAACGCAAGAACCAACTTCTCGGGGACTCACTGTCTACTGCAGAATCCTCCCCTGATGAGCTTGATTTGAGGATTGCTAGTGTCCTAAAGAGT ACAGGTCATCATTATGAAGGTGGATTTTGGACAGACCGAGGTAACCATATCCCAGCAGATGGCAAGCGGCATGTTGCCATTGTTACAACTGCTAGTCTTC CATGGATGACTGGAACAGCTGTGAATCCTCTTTTCAGAGCAGCGTACTTGGCGCAATCAGATAAACAAGATGTCACCTTGTTGGTTCCATGGCTCTGTAA GTCAGATCAAGAACTTGTTTACCCCAACCGTCTCACTTTTAGCACACCCGAGGAGCAAGAGAGTTACATTCGCGACTGGCTTGAAGAAAGAACTGGCTTT AAAGCTGATTTCAAGATATCCTTCTATCCAGGAAAGCGTTCGTCTCGTCTTCCGTCGGAGAATGTGTTCGTGAAGAAGCTCCAGCCGAAGATTTCGGAGC TGCGGAGAGTGTACTCGGCGCCGGAGATAAGTAAGAAGGTACTGGTGAAGTGGGGTCCTACTAAGGCGAAATTAGGGATTGATTTGTCGAGCATTAGAAA CGCTCTGGTGTCTGAGTATGGCGATGATGAAGTTGTGGAGTTCGATCGGGTGTGGAGAGGGAAGAGGAGGCTCAAGTTCAATGAGTTTTGGGGTGAGTGG AAAGTGGAGAGTGAAGGGAATGTGTATGAGGATTGGAAATGGAAGCCACTGGGGGATTTGAAGAAGCGGTTTAAGGAGCTCGAGAAGAAGAGTGAGCTGG GTGAAATGCTTGAGGGGTTTAAGAACAGTGAGCTTGTGGAGAAGGTGAAATCTAGCTTGAAATCAATTCGGAAGGAGCCATATGAGTCACAGGAAGTACC GCCACTTGACGTACCTGAACTCTTGGCAAAAGTATGTGACAAGATAGTAGAAAGCTTGTGTAGTAAACGCAAGAACCAACTTCTCGGGGACTCACTGTCT ACTGCAGAATCCTCCCTCGATGAGCTTGATTTGAGGATTGCTAGTGTCCTTCAGAGTACAGGTCATCATTATGAAGGTGGATTTTGGACAGACCGAGGTA ACCATATCCCAGCAGATGGCAAGCGGCATGTTGCGATTGTTACAACTGCTAGTCTTCCATGGATGACTGGAACAGCTGTGAATCCTCTTTTCAGAGCAGC GTACTTGGCGCAATCAGATAAACAAGATGTCACCTTGTTGGTTCCATGGCTCTGTAAGTCAGATCAAGAACTTGTTTACCCCAACCGTCTCACTTTTAGC ACACCCGAGGAGCAAGAGAGTTACATTCGCGACTGGCTTGAAGAAAGAACTGGCTTTAAAGCTGATTTCAAGATATCCTTCTATCCAGGAAAGTTCTCTA AAGAAAGAAGAAGCATAATCCCTATGGGCGATACTTCTCAGTTTATATCATCGAAGGAAGCTGACATAGCTATCCTAGAAGAACCTGAACATTTAAACTG GTATCATCATGGTAAGCGCTGGACCGATACATTCAATCATGTCGTTGGAGTTGTCCACACAAATTACCTGGAGTATATAAAGAGGGAGAAGAATGGAGTT TTACAAGCTTTCCTTGTTAAACACATAAACAATTGGGTTGCACGAGCATACTGCCACAAGGTGCTTCGCCTTTCTGCTGCTACGCAAGACATGCCGAAGT CATTAGTGTGTAATGTGCATGGCGTAAACCCGAAGTTTTTGCGAATAGGTGAAAAAGTTGCTGCAGAAAGGGAACTCGGGCAGCATACCTTCTCAAAAGG AACATATTTCTTAGGCAAAATGGTATGGGCTAAGGGTTACAGAGAGCTGGTAGATTTACTGGCCAAACACAAGAGCGATCTGGACGGCTTCAAGGTCGAT GTATTCGGGAATGGTGAAGATGCACATGAAGTCAAGACCGCCGCTAAATCACTAAATCTCAATATGAACTTCCTTAAAGGAATCGATCATGCTGATGATT CTCTCCACGGGTACAAAGTGTTCGTAAACCCAAGCGTGAGTGACGTGCTCTGCACGGCAACAGCCGAGGCGCTCGCTATGGGGAAATTCGTGGTGTGCGC GGACCACCCTTCCAACGAGTTCTTCAGATCATTTCCCAACTGTTTAACGTACAAAACATCCGAAGAATTCGTTGCGAAGGTGAAGGAAGCAATGGAGAGA GAGCCTCAACCTCTGACGCCGGAGCAAAGATACCACCTCTCCTGGGAGGCCGCAACCCAGAGATTCCTGCAATGCTCCGATCTCGACAAGCTCTTAACCG ACGACGACACAAGTTCCCCGGAGAAAACGATCTTGAAAGCTGCTCCGGCGAGGAGGAAGATCACCGGGTTGCTCGATGGGGGACTGGCATTCGCGCACTA CTGCCTGACGGGTAGCGAGCTGCTTAGACTCTGCACCGGCGCAATACCGGGCACGATGGAGTACGACAAGCAACACTGTAAGGACTTGAGATTGCTGCCG CCGCATGTGGAGAATCCTGTCTACGGCTGGTGA
AA sequence Show only first row Show all	>Lus10004200 pacid=23175381 polypeptide=Lus10004200 locus=Lus10004200.g ID=Lus10004200.BGIv1.0 annot-version=v1.0 MLEGFKNSELVEKVKSSLKSIRKEPYESQVSSPYVRPPEVPPLDVPELLASLVKQSGPFLDQLVVKKGNKRKNQLLGDSLSTAESSPDELDLRIASVLKS TGHHYEGGFWTDRGNHIPADGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAQSDKQDVTLLVPWLCKSDQELVYPNRLTFSTPEEQESYIRDWLEERTGF KADFKISFYPGKRSSRLPSENVFVKKLQPKISELRRVYSAPEISKKVLVKWGPTKAKLGIDLSSIRNALVSEYGDDEVVEFDRVWRGKRRLKFNEFWGEW KVESEGNVYEDWKWKPLGDLKKRFKELEKKSELGEMLEGFKNSELVEKVKSSLKSIRKEPYESQEVPPLDVPELLAKVCDKIVESLCSKRKNQLLGDSLS TAESSLDELDLRIASVLQSTGHHYEGGFWTDRGNHIPADGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAQSDKQDVTLLVPWLCKSDQELVYPNRLTFS TPEEQESYIRDWLEERTGFKADFKISFYPGKFSKERRSIIPMGDTSQFISSKEADIAILEEPEHLNWYHHGKRWTDTFNHVVGVVHTNYLEYIKREKNGV LQAFLVKHINNWVARAYCHKVLRLSAATQDMPKSLVCNVHGVNPKFLRIGEKVAAERELGQHTFSKGTYFLGKMVWAKGYRELVDLLAKHKSDLDGFKVD VFGNGEDAHEVKTAAKSLNLNMNFLKGIDHADDSLHGYKVFVNPSVSDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEEFVAKVKEAMER EPQPLTPEQRYHLSWEAATQRFLQCSDLDKLLTDDDTSSPEKTILKAAPARRKITGLLDGGLAFAHYCLTGSELLRLCTGAIPGTMEYDKQHCKDLRLLP PHVENPVYGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	0	1
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	1.4	0.9470
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10015207 [exp]	2.0	0.9428
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	2.4	0.9469
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10028133 [exp]	3.9	0.9107
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	5.2	0.9458
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	6.0	0.9286
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10040631 [exp]	6.2	0.8946
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	6.7	0.9388
AT4G14605			Mitochondrial transcription te...		Lus10035227 [exp]	9.7	0.9066
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	11.5	0.9048

Compare expression of checked genes

Lus10004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.