Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35940 360 / 7e-115 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G16400 251 / 1e-75 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 251 / 5e-75 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G75410 239 / 1e-70 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G27220 236 / 1e-70 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G19700 236 / 2e-69 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G23760 227 / 3e-65 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G36870 224 / 2e-63 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT5G41410 215 / 6e-61 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT5G02030 192 / 4e-53 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029405 [exp] 983 / 0 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 341 / 5e-109 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10028802 [exp] 281 / 1e-84 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 276 / 3e-83 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 277 / 4e-83 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 231 / 4e-67 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10033192 [exp] 218 / 6e-62 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10016790 [exp] 207 / 2e-59 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10021498 [exp] 210 / 6e-59 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069700 [exp] 604 / 0 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 595 / 0 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 419 / 1e-136 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 403 / 1e-130 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 286 / 1e-86 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 278 / 1e-83 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 253 / 3e-74 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.003G131300 [exp] 243 / 5e-71 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 241 / 3e-70 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.007G032700 [exp] 236 / 6e-67 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10004201 pacid=23175383 polypeptide=Lus10004201 locus=Lus10004201.g ID=Lus10004201.BGIv1.0 annot-version=v1.0 ATGGCGACATACTTCCACGGCAATCCCGACATCCAGTCGGCGACGGCGGCCGTCGACGGTCTCCAAACCTTAGTCCTCATGAACCCATCCTACGTCCAGT ACTCCGACACTCCTCCTCCGCAACAACCACCGCCACCTCAATTCGTCGGAATCCCACTTGACCACCACCACCAACACCACCATGAATTGTCTTCTCCTCC GGCGATGCATCATCGGCAGCTTCATCAATACAATCTCTACAGCAGCGCAATTGACCCTACGGAGGCGACTGCGCGTGAGACTCCACGCGCTCACCAGCAG GGTTTGTCCCTGACGCTCTCGGCGGCGGCGGCGGCTGCTGGAGGTGGGTACGGGTCGGGTATGTCGGAGGAGCACTGTGTACGGGTGTCGGTTGGGTCGG GTTCTTCGTCGGTAACGGTGGCTAATAATGGCGGGGGAGGGAGTGGGGTCCACAACGGGATGCAGTTAGGGGTGTTGGTGAGCTCCAAGTACTTGAAAGC TGCTCAGGAATTGCTGGATGAAGTCGTTAATGTTAATAGTAACGGTAATAATGGAGCCGCAAGCAAGAACGGCGAATCCGGATCAAGGAAAGCGATTAAT GATAATAACAATTCGGCTGTCGGTGGCGAATCGTCAGTTGCCGGCGATGGGAAAGTTGATGAGGGAGCGCAGCCGGCGCCGGAGCTTTCCACGGCGGAGA GGCAGGAGATTCAGATGAAGAAAGCTAAACTCATCAGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTATCACCACCAGATGCAGGCGGTGATCGG GGCGTTCGAGCAAGCGGCGGGGATCGGGACGGCGAAGACGTACACAGCTCTAGCGCTGAAGACGATATCGAAGCAGTTCCGATGCCTGAGAGACGCGATC ACTGGCCAAATCAAGGCGGCGAATAAGAGCTTGGGAGAGGAGGAAAGCCCCGGCGGAGGTAAGATCGAAGGTTCGAGGCTCAAGTTCGTCGATCACCACC TCCGGCAGCAGCGGGCGCTTCAGCAATTGGGGATGATCCAGCACAACGCTTGGAGACCTCAGAGAGGATTGCCTGAGCGATCCGTCTCCATCCTCCGCGC TTGGCTCTTCGAACACTTCCTCCATCCATATCCAAAGGATTCTGACAAGCATATGCTGGCGAAGCAGACTGGACTTACCAGGAGCCAGGTATCGAATTGG TTCATCAATGCTAGAGTTAGGCTATGGAAGCCAATGGTGGAGGAAATGTACACAGAGGAGATGAAGGATCAGGAACAAACCAACAACAATGGAGTTTCAG GAGACAAGATCGTGAGCAACAAAAGCGATCAGAATGAGGAATCCTCTTCGCAATCCGTCCCATTCCATCATGACAAGAATCTGGGTAGTAGCAGTTTCAG GTCATCAATGGACAACAACAACAACAATTCACCAAACCAGAATGTTCCATCTGGGATATCGATCTCAACCTTCCCACCATCGATCGGAAGCCTCCGAAAC CACTCTGCATTCTCCATCACCGCCTCCTCAGAACTCGAAGGGATCACTCAAGGCAGCCCCAAGAAGCCTCGAAACAACAGCCACAACAACCACATTGACA TGTTGCAGCTTCCATCCCCGACTAGCATTCAATCTAACAACAACAACAACAACAACAACGATCATCATGACCTGATCAAGTTTGTGGACGAGAGGCAGGG GCGAGATGCAGGGTATTCGTTCATGGGAGTACACAACAACTTCATGCAGGGAGCATTCGGGCAGTACCCGATTGCAGAGATCGGGAGGTTCGATCCGGAT CAGTTCACTCAGAGATTCTCTTCAGGAAATGGTGTCAACCTCAGTTTAGGGCTGCCACATTGTGATAACCTCAACTTATCAGCATCAGCAACCCACCATA GCTTTCTTCCGAACCAGAGCATCCAGCTAGGGATGAGGAGAAATGATCAGATGGGAGAAGCAGACGAGTTCGGAGCCATTGCTAGCTCCGCTGCTCCAAC AACGTACGAGAGCATCAACAACATTCAGAACAGGAAGGGGTTTGCAGCACCGCTATTGCCGGACTTTGTAACATGA
AA sequence Show only first row Show all	>Lus10004201 pacid=23175383 polypeptide=Lus10004201 locus=Lus10004201.g ID=Lus10004201.BGIv1.0 annot-version=v1.0 MATYFHGNPDIQSATAAVDGLQTLVLMNPSYVQYSDTPPPQQPPPPQFVGIPLDHHHQHHHELSSPPAMHHRQLHQYNLYSSAIDPTEATARETPRAHQQ GLSLTLSAAAAAAGGGYGSGMSEEHCVRVSVGSGSSSVTVANNGGGGSGVHNGMQLGVLVSSKYLKAAQELLDEVVNVNSNGNNGAASKNGESGSRKAIN DNNNSAVGGESSVAGDGKVDEGAQPAPELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQAVIGAFEQAAGIGTAKTYTALALKTISKQFRCLRDAI TGQIKAANKSLGEEESPGGGKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNW FINARVRLWKPMVEEMYTEEMKDQEQTNNNGVSGDKIVSNKSDQNEESSSQSVPFHHDKNLGSSSFRSSMDNNNNNSPNQNVPSGISISTFPPSIGSLRN HSAFSITASSELEGITQGSPKKPRNNSHNNHIDMLQLPSPTSIQSNNNNNNNNDHHDLIKFVDERQGRDAGYSFMGVHNNFMQGAFGQYPIAEIGRFDPD QFTQRFSSGNGVNLSLGLPHCDNLNLSASATHHSFLPNQSIQLGMRRNDQMGEADEFGAIASSAAPTTYESINNIQNRKGFAAPLLPDFVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	0	1
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	1.0	0.9522
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	3.5	0.9217
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029702 [exp]	4.5	0.8874
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	4.9	0.9173
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	5.2	0.9033
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040064 [exp]	5.9	0.9126
					Lus10024153 [exp]	6.2	0.8882
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10021270 [exp]	6.6	0.8861
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	7.7	0.8958
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	8.1	0.9121

Compare expression of checked genes

Lus10004201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.