Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11660 219 / 6e-73 NHL1 NDR1/HIN1-like 1 (.1) AT5G06330 211 / 1e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 209 / 5e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 198 / 1e-64 NHL12 NDR1/HIN1-like 12 (.1) AT3G44220 192 / 3e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 168 / 1e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 166 / 5e-52 NHL22 NDR1/HIN1-like 22 (.1) AT2G35970 165 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 151 / 5e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 111 / 3e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029406 [exp] 362 / 2e-129 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10021286 [exp] 255 / 5e-87 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 254 / 2e-86 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10000157 [exp] 163 / 8e-51 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043410 [exp] 152 / 5e-46 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 143 / 9e-43 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 119 / 3e-33 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013327 [exp] 111 / 3e-30 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1) Lus10030193 [exp] 102 / 4e-26 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071500 [exp] 233 / 5e-78 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.006G204200 [exp] 222 / 5e-74 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.009G019600 [exp] 170 / 2e-53 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G088000 [exp] 138 / 4e-41 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 133 / 4e-39 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 128 / 4e-37 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 102 / 4e-27 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 97 / 3e-25 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 75 / 2e-16 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 66 / 6e-13 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10004202 pacid=23175412 polypeptide=Lus10004202 locus=Lus10004202.g ID=Lus10004202.BGIv1.0 annot-version=v1.0 ATGTCGGCCAAAGACTGCGGATCCCACGGCAAAAAGCGACGGAAGCTAATCCGCCGGATCATCGCTGGAACCCTAATCTTCCTCTTCATATCCCTCCTAA CAATCCTCATAGTATGGGCAATCCTCCGCCCCAAGAAACCAACCTTCACTCTCCAAGACGCCACCGTGTACGCCTTCAACGCCACGTCATCCCCGACCAG CCAGCTCACCTCCAACTTCCAGCTCACCTTTCTCGCCGCGAACCCCAACTCCAAGATCGGTGTCCACTACGACAAGCTCGACATCTACGCGAGGTACCGC AGCCAGCAGATCACGCTCCGCACGCGCATCATGCCTTTCTACCAGGGCCGGAAGGAAGTCAACGTCTGGTCGCCGTTTGTGTACGGCACGTCCGTCCCTG TCGCGCCGTTCAACGTGGGGCCGCTTTCGCACGACCAGGATGTTGGGAGCGTGATGATCACGATTGAGATGGATGGCCGGGTGAGGTTTAAGGTTGGGAG CTTCGTCTCCGGTGGGTACCGTTTGTTTGCTAAGTGCTCGGCGTTTATACAGTTTGGGAATTGGAGTGGTAACGGCGCCGTTAAGTATCAGCTGAGTGAG AGGTGCAGCGTCAGCGTTTAG
AA sequence Show only first row Show all	>Lus10004202 pacid=23175412 polypeptide=Lus10004202 locus=Lus10004202.g ID=Lus10004202.BGIv1.0 annot-version=v1.0 MSAKDCGSHGKKRRKLIRRIIAGTLIFLFISLLTILIVWAILRPKKPTFTLQDATVYAFNATSSPTSQLTSNFQLTFLAANPNSKIGVHYDKLDIYARYR SQQITLRTRIMPFYQGRKEVNVWSPFVYGTSVPVAPFNVGPLSHDQDVGSVMITIEMDGRVRFKVGSFVSGGYRLFAKCSAFIQFGNWSGNGAVKYQLSE RCSVSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	0	1
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	1.0	0.9336
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	2.0	0.9196
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	2.2	0.8834
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	6.5	0.8896
					Lus10025897 [exp]	7.2	0.8855
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	7.5	0.8801
AT4G02090			unknown protein		Lus10010014 [exp]	8.1	0.8620
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	8.9	0.8720
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	10.1	0.8818
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	13.6	0.8070

Compare expression of checked genes

Lus10004202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.