Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029407 [exp] 202 / 4e-66 AT3G52480 74 / 4e-16 unknown protein Lus10016965 [exp] 72 / 6e-16 AT3G11640 69 / 7e-15 unknown protein Lus10000027 [exp] 47 / 1e-06 AT3G11640 63 / 8e-13 unknown protein Lus10016964 [exp] 44 / 5e-06 AT3G11640 62 / 3e-13 unknown protein Lus10021290 [exp] 43 / 2e-05 AT3G11640 61 / 2e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071700 [exp] 71 / 9e-15 AT3G52480 47 / 3e-06 unknown protein Potri.006G204400 [exp] 69 / 3e-14 AT3G52480 74 / 5e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004203 pacid=23175380 polypeptide=Lus10004203 locus=Lus10004203.g ID=Lus10004203.BGIv1.0 annot-version=v1.0 ATGAATTTCATCAACAAGCTCGGCCTAGCACTAACCGCCATCTTCGTCATATCCTTAGTCTTCCTCGCGTTCCAAATTCTCTACCTCCTTTGGCGCCGAA GAAGAAGATCCCACTCACCGGACATCCGCCACGTGGAGCTTGGCATCGGCGGCCAGGCGAACCTCACGCCGAGCTGCGGCGGCCAGCCAATTTCGCCGTC CTCTAAGGATGTTCTCTACTTCTTCTGCTGGAAGAATCACCACCACGCCAATCGTGTCGAGCCTGCAGTAGTAGTTTCCGAGGGCGTAGTCGTTACAACT GTGGTGCCGGTTGACGATGAGTTCGAGGAAATGGTCAAACTGCACGAGCTGTACGGCCCTTCGAGGACTCTGTTCACGATCAAGGAGGAAACAGAGATGG AGAACGAACTCGGCACCTCCCGTCAAAACGACGCCGTATTGGAGATTAAGAAGACTGAGGTGGATGATGTCTTATCGGATGACGAGGATGAGGTAACGGC GTTCGGGACGCCGTGCGGTTCCCCACCGTACTACACACCATCGCCATCTCCGCCTATTGAAGAAAACGGCGCGTCGTTTAGGGGAAACATTACGGACATA ATAGCTGGCCGTTAG
AA sequence Show only first row Show all	>Lus10004203 pacid=23175380 polypeptide=Lus10004203 locus=Lus10004203.g ID=Lus10004203.BGIv1.0 annot-version=v1.0 MNFINKLGLALTAIFVISLVFLAFQILYLLWRRRRRSHSPDIRHVELGIGGQANLTPSCGGQPISPSSKDVLYFFCWKNHHHANRVEPAVVVSEGVVVTT VVPVDDEFEEMVKLHELYGPSRTLFTIKEETEMENELGTSRQNDAVLEIKKTEVDDVLSDDEDEVTAFGTPCGSPPYYTPSPSPPIEENGASFRGNITDI IAGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52480			unknown protein		Lus10004203 [exp]	0	1
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	3.2	0.9758
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	3.9	0.9764
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	7.1	0.9749
AT4G11950			Protein of unknown function (D...		Lus10002998 [exp]	7.5	0.9311
AT5G06610			Protein of unknown function (D...		Lus10013534 [exp]	9.5	0.9586
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	10.0	0.9663
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035897 [exp]	11.0	0.9374
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	13.0	0.9447
AT3G52480			unknown protein		Lus10029407 [exp]	13.3	0.9503
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	13.4	0.9515

Compare expression of checked genes

Lus10004203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.