Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 445 / 1e-153 Eukaryotic aspartyl protease family protein (.1) AT5G45120 154 / 1e-41 Eukaryotic aspartyl protease family protein (.1) AT3G25700 153 / 2e-41 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 145 / 5e-38 Eukaryotic aspartyl protease family protein (.1) AT2G03200 141 / 7e-37 Eukaryotic aspartyl protease family protein (.1) AT3G59080 141 / 1e-36 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 130 / 7e-33 Eukaryotic aspartyl protease family protein (.1) AT4G16563 127 / 7e-32 Eukaryotic aspartyl protease family protein (.1) AT1G25510 125 / 3e-31 Eukaryotic aspartyl protease family protein (.1) AT3G61820 125 / 3e-31 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029408 [exp] 801 / 0 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 441 / 1e-152 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 416 / 8e-144 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 180 / 8e-51 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10013324 [exp] 158 / 1e-45 AT3G52500 177 / 2e-53 Eukaryotic aspartyl protease family protein (.1) Lus10005211 [exp] 157 / 2e-45 AT3G52500 179 / 2e-54 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 166 / 3e-45 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 160 / 2e-43 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10013325 [exp] 145 / 4e-40 AT3G52500 159 / 2e-45 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071900 [exp] 488 / 6e-171 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 486 / 6e-170 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 387 / 5e-131 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 168 / 1e-46 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 167 / 3e-46 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 160 / 3e-44 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 154 / 3e-41 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G306200 [exp] 152 / 4e-41 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 151 / 2e-40 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 140 / 2e-36 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10004204 pacid=23175385 polypeptide=Lus10004204 locus=Lus10004204.g ID=Lus10004204.BGIv1.0 annot-version=v1.0 ATGGCTTCTTATCCACTCCTCCTTCTCTCCTTCTCCACCATCTTCCTCCTCTCCACCGTCGCAACCGCCGGAATCACAATCCCACTCTCCCCATCCACCA CCGCCCTACCCTCCTCCTCCGCCACCTCCCTCCACCAAATCCTCTCCCACCTCGCTTCCACATCCGTCGCCAGAGCCCTCCGCCTCAAATCACTCTCCCC ACTCACAACCTCCCTCGCCGCCGTCAAATCCCCACTCTTCCCCCGGAGCTACGGCGGATACTCAATCTCCCTCTCCTTCGGCACCCCGCCCCAAACCACC AAATTCGTCATGGATACCGGAAGCTCCCTCGTCTGGTTCCCCTGCACTCCTCGCTACTTCTGTTCCCGTTGCAACTTCCCCAATGTCGACCCTACTAGAA TACCAACTTTCCTCCCGAAAAACTCCGACACCGCCGCCGTCCTCGACTGCCTGGACCCCAAATGCAAGTGGATCTTCGGAAACGACGTCGTTTCGCAATG CCCTGTCTGCCCCAATTGTACTCAAACGGCGTGTCCTCCTTACTTCATTCAGTACGGGTCCGGGTCAACGTCGGGGGTTTTGTTGACTGAGAAGCTGGAT TTTCCTGACAAAACGGTGTCGGATTTCCTCGTCGGATGTTCGATCAATTCCGCCGGAATGCCGGAGGGGATTGCTGGGTTTGGGAGAGGGAATGACTCGC TTCCTTCTCAGATTGGTGCTAAGAGATTCTCTTATTGTATGGTCTCCCACGGATTCGACGATGCTCCGGTTTCGAGCGATCTGGTTCTCGATCTTGACTC TAGGAAGAAGAAGACGCCGGAGGTGAGCTACACTCCGTTCGAACAAAATCCGAACTCGTCGAACTCTGCTTTCCAGACCTATTACTATGTCCCGCTCCGG CAGATCCTCGTCGAAGGCAACCACGTGGAGGTTCCGTACAAGTATCTCGAACCCTCGAGATCACCAGCCAGAAACGGAGGGACGATTGTAGATTCCGGAA CGACGTTTACATACATGGAGCGGCCGGTTTACGACGCGGTGGTGGATCAGATCATGATTCGGATGTCGAATTATACGGAGGCGAAGGTGGTCGAGGATTT GACCGGGTTGGCGCCGTGCTTTAACGTCTCCGACGGCGGAGACACGGCGGTGGTTCCTGAATTGAGCTTCAAGTTTAAAGGTGGGGCGGAGATGAAGCTT CCGGCGACGAATTACTTTGTGCTGGCGGATGATGGGGTTGTTTGTTTGACGATTGTTAGCGACGATGTTGGGGCCGGAGGAGTTGATCATGTTGGGCCGG CGATTGTTTTGGGGAATTATCAGCAGAGGGATTATTATATTGAGTATGATTTGGAAGCGGAGAGGTTTGGTTTTAAGCAGCAGATATGTACTGCCTGA
AA sequence Show only first row Show all	>Lus10004204 pacid=23175385 polypeptide=Lus10004204 locus=Lus10004204.g ID=Lus10004204.BGIv1.0 annot-version=v1.0 MASYPLLLLSFSTIFLLSTVATAGITIPLSPSTTALPSSSATSLHQILSHLASTSVARALRLKSLSPLTTSLAAVKSPLFPRSYGGYSISLSFGTPPQTT KFVMDTGSSLVWFPCTPRYFCSRCNFPNVDPTRIPTFLPKNSDTAAVLDCLDPKCKWIFGNDVVSQCPVCPNCTQTACPPYFIQYGSGSTSGVLLTEKLD FPDKTVSDFLVGCSINSAGMPEGIAGFGRGNDSLPSQIGAKRFSYCMVSHGFDDAPVSSDLVLDLDSRKKKTPEVSYTPFEQNPNSSNSAFQTYYYVPLR QILVEGNHVEVPYKYLEPSRSPARNGGTIVDSGTTFTYMERPVYDAVVDQIMIRMSNYTEAKVVEDLTGLAPCFNVSDGGDTAVVPELSFKFKGGAEMKL PATNYFVLADDGVVCLTIVSDDVGAGGVDHVGPAIVLGNYQQRDYYIEYDLEAERFGFKQQICTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52500			Eukaryotic aspartyl protease f...		Lus10004204 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	1.7	0.8534
AT2G16980			Major facilitator superfamily ...		Lus10004157 [exp]	2.6	0.8609
AT3G52500			Eukaryotic aspartyl protease f...		Lus10029408 [exp]	2.8	0.8485
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10033905 [exp]	6.3	0.8553
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	8.8	0.7889
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	10.4	0.7950
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	12.2	0.8207
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	16.4	0.8240
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	18.4	0.7931
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	22.1	0.7853

Compare expression of checked genes

Lus10004204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.