Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15040 110 / 9e-30 Protein of unknown function, DUF584 (.1) AT4G21970 72 / 6e-16 Protein of unknown function, DUF584 (.1) AT4G04630 69 / 1e-14 Protein of unknown function, DUF584 (.1) AT1G61930 65 / 8e-13 Protein of unknown function, DUF584 (.1) AT3G45210 62 / 4e-12 Protein of unknown function, DUF584 (.1) AT1G11700 63 / 5e-12 Protein of unknown function, DUF584 (.1) AT4G21930 59 / 8e-11 Protein of unknown function, DUF584 (.1) AT5G60680 57 / 4e-10 Protein of unknown function, DUF584 (.1) AT2G28400 56 / 9e-10 Protein of unknown function, DUF584 (.1) AT4G26950 54 / 3e-09 Protein of unknown function, DUF584 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029411 [exp] 433 / 5e-157 AT3G15040 112 / 3e-30 Protein of unknown function, DUF584 (.1) Lus10021309 [exp] 171 / 9e-54 AT3G15040 99 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10016988 [exp] 155 / 3e-47 AT3G15040 87 / 8e-21 Protein of unknown function, DUF584 (.1) Lus10034190 [exp] 84 / 7e-20 AT3G15040 125 / 9e-36 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 70 / 9e-16 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 72 / 3e-15 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 70 / 7e-15 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 64 / 2e-12 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10026507 [exp] 63 / 2e-11 AT5G03230 97 / 1e-24 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076300 [exp] 135 / 2e-39 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.006G209500 [exp] 96 / 5e-24 AT3G15040 65 / 3e-12 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 72 / 2e-15 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 68 / 8e-14 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 67 / 8e-14 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 63 / 3e-12 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 62 / 5e-12 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 61 / 2e-11 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 60 / 4e-11 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 60 / 4e-11 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10004207 pacid=23175413 polypeptide=Lus10004207 locus=Lus10004207.g ID=Lus10004207.BGIv1.0 annot-version=v1.0 ATGGACGCCGAAGCAGCCGGCCGCCGCTACCTCTCCCAGATCCCTCAATCCAGATTCCCCGTCAATGCAATCGGAGACGACGAGCTCAACGAGGACGACA TCCTCTGGACAGACGATTTCAACCCTAGCAACAACCTCATCTCCTCCTCCGCCGCCGCCAAGCAGAAGCCAAAACGCAAGGCCGGAAACCACAGGCGGAG CGTCTCATTCCAGCACACCAGCTCCGGGATCCTAGCCGCCTTACCAGAGCTCAGCAACCACCACCGCAACAAGCCGATGCTGGTCAAAACGATCCCGGCG CCGGTCCCAAGGCCGGCGGCGGAGAGAGATAGCTTCTCCTCGGATTTCTTGTCGACGCAGTCGGCTCCCGGGAGGAAACTGAAGCAATCGGCTCCGATGA AGGTGCCGATTCTGTCGGCGATGGCGATTGCCAAACAGAGGAGGAACAGCAGGTTTAAGGAAGAGGGAAATGGTGGATTCGACGATGAGATGATGCTGCC GCCGCATGAGATCGTGGCGAGGGAGAATTGGAGGCAGTCGTCGTATTCTCACTCGATGCTTGAAGGCGTTGGCCGGACTCTCAAAGGGAGGGATCTAAGG CAGGTTAGAAACGCTGTGTTTCGCCAAACCGGATTTCTTGACTGA
AA sequence Show only first row Show all	>Lus10004207 pacid=23175413 polypeptide=Lus10004207 locus=Lus10004207.g ID=Lus10004207.BGIv1.0 annot-version=v1.0 MDAEAAGRRYLSQIPQSRFPVNAIGDDELNEDDILWTDDFNPSNNLISSSAAAKQKPKRKAGNHRRSVSFQHTSSGILAALPELSNHHRNKPMLVKTIPA PVPRPAAERDSFSSDFLSTQSAPGRKLKQSAPMKVPILSAMAIAKQRRNSRFKEEGNGGFDDEMMLPPHEIVARENWRQSSYSHSMLEGVGRTLKGRDLR QVRNAVFRQTGFLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15040			Protein of unknown function, D...		Lus10004207 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	7.5	0.8542
AT3G15040			Protein of unknown function, D...		Lus10029411 [exp]	12.6	0.8422
AT3G11690			unknown protein		Lus10021243 [exp]	14.2	0.8367
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	17.8	0.8363
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011187 [exp]	19.1	0.7922
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10025888 [exp]	21.5	0.8097
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	22.2	0.8223
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	27.4	0.8292
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	27.9	0.8219
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	32.6	0.8152

Compare expression of checked genes

Lus10004207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.