Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04390 226 / 1e-77 Ribosomal S17 family protein (.1) AT2G05220 225 / 2e-77 Ribosomal S17 family protein (.1.2) AT5G04800 224 / 6e-77 Ribosomal S17 family protein (.1.2.3.4) AT3G10610 221 / 9e-76 Ribosomal S17 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029412 [exp] 253 / 4e-88 AT2G04390 233 / 4e-80 Ribosomal S17 family protein (.1) Lus10021307 [exp] 240 / 5e-83 AT5G04800 231 / 9e-80 Ribosomal S17 family protein (.1.2.3.4) Lus10041076 [exp] 220 / 3e-75 AT5G04800 226 / 8e-78 Ribosomal S17 family protein (.1.2.3.4) Lus10030344 [exp] 223 / 4e-71 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10016985 [exp] 146 / 2e-46 AT3G10610 143 / 1e-45 Ribosomal S17 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017300 [exp] 227 / 4e-78 AT5G04800 229 / 1e-78 Ribosomal S17 family protein (.1.2.3.4) Potri.010G241200 [exp] 227 / 5e-78 AT5G04800 228 / 2e-78 Ribosomal S17 family protein (.1.2.3.4) Potri.016G073750 [exp] 172 / 2e-56 AT5G04800 171 / 5e-56 Ribosomal S17 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00833 [flax] [poplar] Ribosomal_S17e Ribosomal S17
Representative CDS sequence Show only first row Show all	>Lus10004208 pacid=23175400 polypeptide=Lus10004208 locus=Lus10004208.g ID=Lus10004208.BGIv1.0 annot-version=v1.0 ATGGGACGCGTCCGAACCAAGACCGTGAAGAAGTCCTCCCGCCAGGTGATCGAGCGCTACTACTCGAAAATGACGCTGGATTTCCACACCAACAAGAAGA TCCTCGAGGAAGTGGCCATCATCCCGTCGAAGCGCCTCCGCAATAAGATCGCCGGATTCTCCACTCACCTGATGAAGCGGATCCAGAAGGGCCCCGTCCG CGGGATCTCCCTCAAGCTCCAGGAGGAAGAGCGTGAGCGCCGCATGGACTTCGTCCCCGAGGAGTCAGCAATCAGGACTGACGAGATCAAGGTCGACAAG GAGACTAAGGAGATGCTTGCTGCTCTTGGCATGGCCGATATCGGAGGTATAGTCGAGGTCGACCCTATTGCCGTCTCTGCCCCTCCGTTCGGGTTTGGGA GAGGTGCTGGCCGTGGGAGGTACTGA
AA sequence Show only first row Show all	>Lus10004208 pacid=23175400 polypeptide=Lus10004208 locus=Lus10004208.g ID=Lus10004208.BGIv1.0 annot-version=v1.0 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEESAIRTDEIKVDK ETKEMLAALGMADIGGIVEVDPIAVSAPPFGFGRGAGRGRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	0	1
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	1.4	0.9750
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	2.0	0.9783
AT2G04390			Ribosomal S17 family protein (...		Lus10029412 [exp]	2.0	0.9686
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	2.4	0.9705
AT4G15770			RNA binding (.1)		Lus10037509 [exp]	2.8	0.9639
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10020055 [exp]	4.2	0.9658
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	6.6	0.9499
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	7.5	0.9656
AT5G27700			Ribosomal protein S21e (.1)		Lus10029895 [exp]	8.0	0.9528
AT5G48760			Ribosomal protein L13 family p...		Lus10032599 [exp]	8.1	0.9658

Compare expression of checked genes

Lus10004208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.