Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06270 91 / 2e-24 unknown protein AT3G11600 85 / 3e-22 unknown protein AT5G22270 51 / 2e-09 BIN4 ? unknown protein AT3G52561 44 / 1e-06 unknown protein AT1G16500 43 / 1e-05 unknown protein AT1G79160 39 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029413 [exp] 169 / 1e-55 AT5G06270 100 / 4e-28 unknown protein Lus10021305 [exp] 110 / 5e-32 AT5G06270 122 / 8e-37 unknown protein Lus10016982 [exp] 109 / 7e-32 AT5G06270 122 / 4e-37 unknown protein Lus10043404 [exp] 62 / 3e-13 AT3G11600 78 / 1e-19 unknown protein Lus10034181 [exp] 60 / 2e-12 AT3G11600 87 / 3e-23 unknown protein Lus10002577 [exp] 44 / 3e-06 AT2G33510 99 / 1e-26 unknown protein Lus10001804 [exp] 44 / 9e-06 AT2G33510 145 / 8e-44 unknown protein Lus10031179 [exp] 39 / 0.0005 AT1G79160 197 / 5e-63 unknown protein Lus10031755 [exp] 38 / 0.0006 AT1G79160 201 / 1e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206000 [exp] 97 / 3e-27 AT5G06270 108 / 8e-32 unknown protein Potri.016G073400 [exp] 96 / 7e-27 AT5G06270 115 / 2e-34 unknown protein Potri.009G161400 [exp] 88 / 1e-23 AT5G06270 91 / 9e-25 unknown protein Potri.004G200300 [exp] 69 / 4e-16 AT5G06270 71 / 7e-17 unknown protein Potri.010G241400 [exp] 56 / 1e-10 AT3G11600 56 / 7e-11 unknown protein Potri.005G096800 [exp] 42 / 3e-05 AT1G79160 209 / 7e-68 unknown protein Potri.007G067300 [exp] 40 / 0.0001 AT1G79160 164 / 3e-50 unknown protein Potri.001G446800 [exp] 38 / 0.0007 AT1G79160 113 / 7e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004209 pacid=23175407 polypeptide=Lus10004209 locus=Lus10004209.g ID=Lus10004209.BGIv1.0 annot-version=v1.0 ATGAACAGAAGGAACATCAACCGCAACCGCAACAGAAACACCATTAACAACATTCCAGAACTGGACTTGAAGCTAAGCCTCTCACCAAGCAGGGGAATGG AGTCGCCTAGCCGGTCATCGACAATGTCGTCGGCTTCACCACCGAGCTCTTCCTGCGTGACTTCGTTGGAGACGAACCAGGACGAGAGCAGTACTATGCT GAGGTTTACATCTAGTCCCGATGCAACTTCCATGGTGCTTGTGGGTTGTCCGAGGTGCCTTATGTACGTGATGCTCTCAGCCGAAGATCCTAAATGCCCT CAGTGTAAAAGCACCGTCTTGCTCGATGTCCTCCACGACGATAGCAACAATCGGAGGGGAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10004209 pacid=23175407 polypeptide=Lus10004209 locus=Lus10004209.g ID=Lus10004209.BGIv1.0 annot-version=v1.0 MNRRNINRNRNRNTINNIPELDLKLSLSPSRGMESPSRSSTMSSASPPSSSCVTSLETNQDESSTMLRFTSSPDATSMVLVGCPRCLMYVMLSAEDPKCP QCKSTVLLDVLHDDSNNRRGRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06270			unknown protein		Lus10004209 [exp]	0	1
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10039797 [exp]	1.7	0.9213
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	1.7	0.9374
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	3.2	0.9282
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	4.5	0.9168
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	8.9	0.9196
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	9.4	0.8881
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	10.1	0.8963
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	11.6	0.8897
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	11.7	0.8411
AT3G21880	CO	COL12	B-box type zinc finger protein...		Lus10031584 [exp]	13.8	0.8695

Compare expression of checked genes

Lus10004209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.