Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37340 51 / 9e-07 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 50 / 2e-06 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G61860 45 / 6e-05 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G19350 45 / 9e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47490 45 / 9e-05 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 45 / 0.0001 ATRBP47C' RNA-binding protein 47C' (.1) AT4G25500 45 / 0.0001 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT5G52040 45 / 0.0001 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G54900 45 / 0.0001 ATRBP45A RNA-binding protein 45A (.1) AT2G46610 44 / 0.0002 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029414 [exp] 913 / 0 AT2G37340 56 / 2e-08 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Lus10016981 [exp] 313 / 8e-98 AT3G61860 50 / 3e-06 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038883 [exp] 57 / 2e-08 AT4G25500 206 / 7e-64 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Lus10031277 [exp] 44 / 0.0003 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205800 [exp] 229 / 3e-66 AT2G37340 52 / 6e-07 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.014G076600 [exp] 51 / 9e-07 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G153600 [exp] 49 / 3e-06 AT4G25500 264 / 7e-88 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.012G133600 [exp] 48 / 2e-05 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.015G135800 [exp] 47 / 4e-05 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.004G017200 [exp] 46 / 5e-05 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.018G002300 [exp] 46 / 6e-05 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.014G101800 [exp] 44 / 0.0001 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10004210 pacid=23175411 polypeptide=Lus10004210 locus=Lus10004210.g ID=Lus10004210.BGIv1.0 annot-version=v1.0 ATGTCATTATACATTGGTAATCTGTCATCTAACACACCCAAAGATGAACTAGAACGTGTTTTCCGAAGGTTTGGACAGTGTGACATACGGATCAAAGATG GGTATGCCTTTGTGGTGTATGAGTTTCCTCCAAACGCTGAGAAAGCCCTGAAAGCACTACAGAAGAAGTACATCTGCGGGCAGCTATTAACTCTTACATG GTCAAAGAAACAACCTAAACCATTTGACAGAAATGGAAGGTCGGCTGCAAGGTACGAGTCACAACATGGTAGATATTCTTCAAAGAGTGCAGAGGATGTT CAAAAGAAGTTAAATTTGTCTGCTCAAGAAGATTATAGAATGTTTAGCGAGCATGAAGATGAGAATGAAAGAAGGGTTTGCTCTGGTATGCTTCAAGAGG GGACAGCTTACCATCCTGATGACATGAAGGATGTTTCTGGTGAAGAGCACCTCAGACACAGGGGGGATGAAATGGAGGACAATGGTAGATGGGATCTCAA ACTTGATGACCGGCTGAATGAAAATGATGTTAATAATGGAATGAAGTTCGACAGGTATGAACCTAAATGGGGCAGGAACGATGATGATACCCATCAATTT CATCATTCTGGGGATAGACGTAGAGACCACATTGTTGAAGGAAATCTAAAGCGCAAGAATGCCTGTTATAGTTGTGGGGGATTAGGTCACAAAATGTGGA ACTGTCCTGAGAAAAGCTCTCTCAGGAGTAAATGGTCCAAGTTTGACCAAAGGGGCAACATCAATGTGAAGGGGAAAAGGAGAAGTGAAAATGAGATGGG AGGACCCAGATCAGGAGAGACATATGTGTCAAGGAGGGATCCCGAGCACACAGAGGAAGTTGAGAAGAAACGAAGAAGGGAAAGAAGCCGATCGCCTAAA AGACGTAACACTAAAAGAGGAAGAAGGTCAGTTTCATCTCCTCCTGGTTCTAGTCACAAGAGATTAAGATCAGTGCCCAAGTCCTGGAAGCATACACGTG TGTCAAATGGCCACTCCAGGTTTCATTCAGCATCATCCAACTCAAGGTCTGTTTCAACATCTCATAGGTTCAGAAATGCAAGATCCAACTCGCCTGCATC TTTATCTTTGTCTGTGTCACTGTCCAAGCCTTTACCGTCGACAAATAAGGCTCAGTTGGGCCGAGAAGGTTCATCGGACACTGTTAAAGCTGCAGACTCC AGAGAGATTGTGGTTGAGAAGGACCTAGCAGGAGAAATTAATGCAAGGGTTGAAGATTCTGGACTTACAAATAAAGTAACTCTAGCAAATTCTACTTTAT CTTTGGATTTAGAACGCGAAGTTGGTAAAGGGGAGCTACCGCTCAAGGACAACAGCGAAAATTTGTCTGCCCCACTCAATGATGTGATGGATCCTAGTAC ATCCCTCACGAAGAAAGGTACAGTTGTTGCGATGAGCTCTTCACCCAAAAGGCTGATGGGGATAGCTTTGGAATATTCAGACCCAGCCATAGCAGAGAAC GTGGCATGTTCTGTTGCGAAACCAGAGTCTGAACTGTCAGTTATTCCAGGCACCTCCAAATCGACTGATGTTCCCCCTGGAGAGTTGTGTTTGGTTCTAA AGCACTATGGCCTTGAGCTTCCAGATGAAGATGAAATGCATGTAAACCCAGATGCTTACTTTGGTGCTGCTCGCTTTTGGCCTTGGGAAATCATCTATTA CAGGAGATTGAAGAAAGGTCCTGTATCCATTGAAAACTATGCGAGGCGCATGGAGCAAAATCATAAATTTGGTATTGTTGACAAGTACGTTAGAAGCAGT AGTGGATGGGTAGAACTTCACCAAGGGAAGGTGTAG
AA sequence Show only first row Show all	>Lus10004210 pacid=23175411 polypeptide=Lus10004210 locus=Lus10004210.g ID=Lus10004210.BGIv1.0 annot-version=v1.0 MSLYIGNLSSNTPKDELERVFRRFGQCDIRIKDGYAFVVYEFPPNAEKALKALQKKYICGQLLTLTWSKKQPKPFDRNGRSAARYESQHGRYSSKSAEDV QKKLNLSAQEDYRMFSEHEDENERRVCSGMLQEGTAYHPDDMKDVSGEEHLRHRGDEMEDNGRWDLKLDDRLNENDVNNGMKFDRYEPKWGRNDDDTHQF HHSGDRRRDHIVEGNLKRKNACYSCGGLGHKMWNCPEKSSLRSKWSKFDQRGNINVKGKRRSENEMGGPRSGETYVSRRDPEHTEEVEKKRRRERSRSPK RRNTKRGRRSVSSPPGSSHKRLRSVPKSWKHTRVSNGHSRFHSASSNSRSVSTSHRFRNARSNSPASLSLSVSLSKPLPSTNKAQLGREGSSDTVKAADS REIVVEKDLAGEINARVEDSGLTNKVTLANSTLSLDLEREVGKGELPLKDNSENLSAPLNDVMDPSTSLTKKGTVVAMSSSPKRLMGIALEYSDPAIAEN VACSVAKPESELSVIPGTSKSTDVPPGELCLVLKHYGLELPDEDEMHVNPDAYFGAARFWPWEIIYYRRLKKGPVSIENYARRMEQNHKFGIVDKYVRSS SGWVELHQGKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10004210 [exp]	0	1
AT5G42785			unknown protein		Lus10002541 [exp]	14.0	0.8607
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	26.2	0.8607
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10010630 [exp]	26.9	0.8269
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	27.2	0.8465
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	31.4	0.8576
AT1G48320			Thioesterase superfamily prote...		Lus10011142 [exp]	36.6	0.7984
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	36.8	0.8295
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	40.2	0.8181
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10005540 [exp]	43.6	0.7747
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017337 [exp]	44.0	0.8401

Compare expression of checked genes

Lus10004210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.