Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44260 325 / 2e-112 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 319 / 6e-110 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 266 / 4e-89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G10960 261 / 3e-87 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 251 / 3e-83 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT1G15920 247 / 1e-81 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G06450 125 / 1e-33 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 114 / 4e-30 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 106 / 6e-27 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 100 / 6e-25 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016980 [exp] 437 / 6e-155 AT5G22250 332 / 8e-114 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10021304 [exp] 434 / 9e-155 AT5G22250 335 / 8e-116 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10034180 [exp] 326 / 2e-112 AT5G22250 410 / 4e-146 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018330 [exp] 264 / 3e-88 AT2G32070 444 / 3e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017123 [exp] 264 / 5e-88 AT2G32070 447 / 1e-160 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10003635 [exp] 257 / 2e-85 AT2G32070 435 / 6e-156 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036291 [exp] 256 / 4e-85 AT2G32070 432 / 9e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029417 [exp] 232 / 1e-77 AT5G22250 164 / 2e-51 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029416 [exp] 180 / 2e-57 AT3G44260 105 / 4e-29 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205600 [exp] 367 / 2e-128 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 351 / 3e-122 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 330 / 3e-114 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 326 / 1e-112 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 274 / 3e-92 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 268 / 6e-90 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 268 / 8e-90 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.018G020900 [exp] 261 / 3e-87 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 259 / 2e-86 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 240 / 4e-79 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10004212 pacid=23175406 polypeptide=Lus10004212 locus=Lus10004212.g ID=Lus10004212.BGIv1.0 annot-version=v1.0 ATGTCCGTTGACAAATCCCGCCTCGTCGCTTCGGCCGGACGACCGGTGGTGACCCGATCGGTGTGGGCGGAGAATTTGGAGTCCGAGTTCGCCGTCATCA TCTCCGTTGCCAAGGAATATCCGCTGATATCCATGGATACGGAGTTCCCCGGCGTGGTCATACGGCCACCGGGAGTCGAGCAGGCCAACATCCGGCTTCA AGATCCGACGGCGCGGTACGCGAGCCTAAAGGCCAACGTCGATTCGCTCAAACTGATCCAGGTAGGGCTCACCGTAGCCGACCGAGACGGCAATCTACCG GATCTTGGCGGCGATAGCTGCTACATCTGGGAGTTCAACTTTAGGGATTTTGACGTCACTTGCGACGATCACTCCCACGACTCCGTCGATCTACTGAGGA GGCAAGGGATCGATTTCGAGAAGAATCGCAAGGACGGAATCCAGGCGGTGAAATTCGCAGAGCTGCTGATGACTTCCGGGCTGGTCCTGAACGATTCGGT CAGCTGGGTGACGTTCCACAGCGCTTACGACTTTGGTTACCTGGTCAAGTGTCTGACTCAGCGGCCTTTGCCGGACAGATTGGACGATTTCCTCGATATT GTGAGGATGTTCTTCGGGGCTAGGGTTTACGATGTGAAGCATCTGATGAAGTTTGGGGCGAATTTGTATGGCGGATTGGACAGGACGTGCACCACTCTGG GTGTGAAGAGGGTTACTGGGAAGAGTCACCAAGCTGGCTCGGATAGTTTGGCCACCCTCCATGCTTTCCAGAAGATGAGAGAGATGTACTTCAGCGATGG TGCAATGGAGAAGTACGCCAATGTGCTATACGGGTTAGAACTGTTGGCTTCATAA
AA sequence Show only first row Show all	>Lus10004212 pacid=23175406 polypeptide=Lus10004212 locus=Lus10004212.g ID=Lus10004212.BGIv1.0 annot-version=v1.0 MSVDKSRLVASAGRPVVTRSVWAENLESEFAVIISVAKEYPLISMDTEFPGVVIRPPGVEQANIRLQDPTARYASLKANVDSLKLIQVGLTVADRDGNLP DLGGDSCYIWEFNFRDFDVTCDDHSHDSVDLLRRQGIDFEKNRKDGIQAVKFAELLMTSGLVLNDSVSWVTFHSAYDFGYLVKCLTQRPLPDRLDDFLDI VRMFFGARVYDVKHLMKFGANLYGGLDRTCTTLGVKRVTGKSHQAGSDSLATLHAFQKMREMYFSDGAMEKYANVLYGLELLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	0	1
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	1.0	0.9590
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	3.2	0.9470
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	6.9	0.9358
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	8.2	0.9316
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	8.8	0.9135
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	9.7	0.9294
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Lus10000921 [exp]	10.0	0.9053
AT4G33740			unknown protein		Lus10020507 [exp]	10.1	0.9282
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10017002 [exp]	11.7	0.9111
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10018581 [exp]	14.0	0.9029

Compare expression of checked genes

Lus10004212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.