Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11620 309 / 5e-105 BAS1 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021300 [exp] 412 / 2e-145 AT3G11620 354 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10016976 [exp] 265 / 3e-89 AT3G11620 186 / 1e-58 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10016975 [exp] 76 / 2e-17 AT3G11620 79 / 2e-19 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072700 [exp] 339 / 8e-117 AT3G11620 411 / 3e-145 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF10230 [flax] [poplar] LIDHydrolase Lipid-droplet associated hydrolase
Representative CDS sequence Show only first row Show all	>Lus10004214 pacid=23175397 polypeptide=Lus10004214 locus=Lus10004214.g ID=Lus10004214.BGIv1.0 annot-version=v1.0 ATGGACGGTAGAGTTCTTAAGGCTGCGAATCTGCGGGTGTGCAAAGTTTCCAGTTATACAACTGAACTGCTGGAGATTCAATCTGACAATCCAACGCTGC ATGTCCTCTTTGTCCCTGGAAATCCAGAACCAGGGTTGCACGAACCTAGGTCACCGCCCAGGTCCTTCGGCTTCAATAACTGGGAGCGTGGGGAACTGTT CTCTTTACAAGAACAAGTTGATCATAAGGTGGATTTCATTAGCCAGGAACTGCAAGTCACCGAGGTCCCCATAGTGTTGGTAGGGTTTTCGGTTCTTTAC GTTGGACACTCTATCGGTTCCTACATAGCGATGGAAACTTTCAGGAGAAAGGGAAACAAGGTTATGTATGTCATAGGTTTGTATCCCTTTATAATGTTAA ATCCCCTCTCAAAGAAGCAGTCTATTATCGCAAAAGTCTCGAGGTCTCTCGTTCTGAGCAACCTGATGAGTTTCATGGTAGCATTTGTTGGATTGCTTCT GAAGTGGCTATCCAGGTACATGGCGATAAAATATATCGGCAACAGTTCATTGTCTAGTTCAGCTGTCGAGATTGCATGTAGTCATCTTCTTAAGTACCAT ATGTTCCGAAACATGCTTTACATGGCAATGACAGAATTCGAGGAGTTTTTAGATGCACCAGACTGGGAGTTCATGAGAGACAACCACAGCAAAATGGCAT TCTTGTTTGGTGTCGATGATCACTGGGGTCCATTACAAGTGTACGAAGAGATGGCCAAGCAGGTCCCTGAGATGACCTTATCAATTGAAAGGGAAGGACT TTCTCATAGCTTTTGTTGCACTGAAGCTGGATCGAAATGGATTGCTAGGCATGTTGCCAGCTTGATAAAGAGTCATAATTTTTCAAGCATACTACCGGAT GCAGATGATTCGAAGACCTCTCATGGTGTTTAG
AA sequence Show only first row Show all	>Lus10004214 pacid=23175397 polypeptide=Lus10004214 locus=Lus10004214.g ID=Lus10004214.BGIv1.0 annot-version=v1.0 MDGRVLKAANLRVCKVSSYTTELLEIQSDNPTLHVLFVPGNPEPGLHEPRSPPRSFGFNNWERGELFSLQEQVDHKVDFISQELQVTEVPIVLVGFSVLY VGHSIGSYIAMETFRRKGNKVMYVIGLYPFIMLNPLSKKQSIIAKVSRSLVLSNLMSFMVAFVGLLLKWLSRYMAIKYIGNSSLSSSAVEIACSHLLKYH MFRNMLYMAMTEFEEFLDAPDWEFMRDNHSKMAFLFGVDDHWGPLQVYEEMAKQVPEMTLSIEREGLSHSFCCTEAGSKWIARHVASLIKSHNFSSILPD ADDSKTSHGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	0	1
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034390 [exp]	2.0	0.9011
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	2.0	0.8666
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	3.9	0.8508
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000154 [exp]	4.2	0.8100
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	4.5	0.8521
AT4G27290			S-locus lectin protein kinase ...		Lus10037731 [exp]	5.2	0.8607
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	9.2	0.7960
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	11.6	0.7941
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10032062 [exp]	16.4	0.7485
AT1G27180			disease resistance protein (TI...		Lus10008519 [exp]	17.0	0.7870

Compare expression of checked genes

Lus10004214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.