Plant FIBer expression Database

Lus10004216 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52520 66 / 2e-14 unknown protein
AT5G06280 55 / 4e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029420
[exp]
243 / 4e-84 AT3G52520 64 / 1e-13 unknown protein
Lus10016973
[exp]
124 / 4e-37 AT5G06280 68 / 7e-15 unknown protein
Lus10023997
[exp]
45 / 4e-06 ND 35 / 0.010
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G072500
[exp]
100 / 2e-27 AT5G06280 61 / 4e-12 unknown protein
Potri.006G205200
[exp]
79 / 4e-19 AT5G06280 52 / 5e-09 unknown protein
Potri.004G200600
[exp]
44 / 3e-06 ND /
Potri.004G178101
[exp]
40 / 0.0001 ND /
PFAM info
Representative CDS sequence
>Lus10004216 pacid=23175395 polypeptide=Lus10004216 locus=Lus10004216.g ID=Lus10004216.BGIv1.0 annot-version=v1.0
ATGGAACAGCCGGATCCCCTCCGCCGCCGGAGCTCCATCGCCCCCGCCGTCCACATCCCCACCATCGACACTTCTGACGTCGAGCTGTACTCCTTCACCA
AATCAACGCCAGGCCCGCTGCGACAACAGTGTTCATCTTCTTCTGCCTACACTTCCATCAAGGACCTCCTCCCTTCCGCCGCTGTCAACTCACCTACCGC
CGCCGTCGCTTCCGGAGGCGGCGGCGGATTCTCCTACGAAATCTCCATCCGCAACCGTCTCGTCAAGCAAGCAGCCTGGGCTTACCTTCAGCCGATGTCC
GCCTCCCCTGGCTCCTCCGGCCACCACTTCCTCCACCGCCTCTGGCTCAAATTCGCATCTCTCCGCCACCCAGTCATCCGATTCTTCCGAATCCGTCTCT
TCCCCGCCGTCTCTCAATTCTTCCTCTCAATCTGGGCTTAG
AA sequence
>Lus10004216 pacid=23175395 polypeptide=Lus10004216 locus=Lus10004216.g ID=Lus10004216.BGIv1.0 annot-version=v1.0
MEQPDPLRRRSSIAPAVHIPTIDTSDVELYSFTKSTPGPLRQQCSSSSAYTSIKDLLPSAAVNSPTAAVASGGGGGFSYEISIRNRLVKQAAWAYLQPMS
ASPGSSGHHFLHRLWLKFASLRHPVIRFFRIRLFPAVSQFFLSIWA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52520 unknown protein Lus10004216
[exp]
0 1
AT1G29670 GDSL-like Lipase/Acylhydrolase... Lus10029280
[exp]
5.0 0.9322
AT4G30030 Eukaryotic aspartyl protease f... Lus10007053
[exp]
8.7 0.8296
AT2G01770 ATVIT1, VIT1 vacuolar iron transporter 1 (.... Lus10034583
[exp]
11.4 0.8343
AT1G07230 NPC1 non-specific phospholipase C1 ... Lus10001207
[exp]
11.8 0.8733
AT5G03610 GDSL-like Lipase/Acylhydrolase... Lus10028145
[exp]
12.5 0.9026
Lus10015828
[exp]
15.1 0.9020
Lus10006075
[exp]
15.2 0.9010
AT5G63800 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-gala... Lus10033500
[exp]
16.7 0.8325
Lus10000028
[exp]
18.0 0.9000
AT5G16080 ATCXE17 carboxyesterase 17 (.1) Lus10002019
[exp]
19.6 0.8976

Lus10004216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.