Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36010 441 / 4e-152 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT5G22220 372 / 1e-125 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT1G47870 233 / 2e-72 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G14960 64 / 5e-11 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT3G01330 61 / 5e-10 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1) AT3G48160 60 / 1e-09 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029421 [exp] 761 / 0 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10016972 [exp] 601 / 0 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 571 / 0 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10005209 [exp] 380 / 4e-130 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10013321 [exp] 332 / 2e-110 AT5G22220 351 / 2e-117 E2F transcription factor 1 (.2.3) Lus10033151 [exp] 243 / 3e-76 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Lus10042941 [exp] 62 / 3e-10 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10032439 [exp] 60 / 1e-09 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 55 / 9e-08 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205100 [exp] 498 / 5e-175 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.016G072300 [exp] 485 / 3e-170 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.004G200800 [exp] 427 / 6e-147 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.009G161900 [exp] 425 / 5e-146 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.002G023400 [exp] 226 / 2e-69 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Potri.012G075300 [exp] 64 / 9e-11 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.015G070300 [exp] 63 / 2e-10 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004217 pacid=23175389 polypeptide=Lus10004217 locus=Lus10004217.g ID=Lus10004217.BGIv1.0 annot-version=v1.0 ATGAGGCGCCACCTCGCCTTTGTCTCGATGATGCCGCCGTTCGTTGCTCCTGATGATTACCACAGGTTCTCCACTCCTCCCGCTAGCTCTAAAGTCGCCG ATCGGGATGCGGAGGCTATCGTCGTGAGATCTCCCGCTTTCAAACGGAAGCTCAAGCTAGATGATACCGGAATTGATTCTACCAAGTGGACTACCAATGC CGGACACACTGATCCATCCAGCAGTCCTTTTCAGACACCGACGAAAGGGGGAAGAACGTACAAGCCTAAGTCTACTAAAGCCAATAAGGCTCTTCCTCAG ACACCAGTGTCAAATCCTGGCTCCCCATCAACACTTACTCCTTCTGGCACTCGATACGACAGTTCCTTAGGCCTTCTAACAAAGAAGTTTGTCAATCTTA TTAAGGTTGCAGAAGATGGTATTATTGACCTAAACAAGGCTGCAGAAACATTGGAGGTGCAAAAGAGGCGTATATATGACATAACAAATGTCTTGGAGGG AACTGGTCTGATTGAGAAAACACTTAAGAATAGAATACGATGGAAGGGTGTTGGTGGTTCTGATTCCGGAAATGTTGATAATAATGCCTCTTTATTACAG GCAGAAATCGAGAGGTTGTCCCTGGAAGAGCAAAATTTAGACAATCAAATAAGAGAAATGTCAGAAAGACTGAGAAATTTGAGTGAAGATGAAAACAACC AAAAGTGGCTTTTCCTAACGGAAGACGATATTAAGAATCTTCCATGCTTTCAGAATCAAACCCTCATTGCCATTAAAGCTCCCCATGGGACAACTTTGGA AGTTCCTGATCCTGACGAAGCTGTTGATTATGCACAAAGAAGATATAGGATAATTCTTAGAAGTACAATGGGTCCTATTGATGTCTATCTTGTGAGCCAA TTTGAGGAAAATTTCGAGGAGGCAATTGACACAGGGCCCTCAACCAGCGTTGATCATGCTTCTAGCTCAAGTTCAAGCGTAAACCCACATATGGTTTCTA CTCAAGGAACCCAGAAGGCAGTGGAACCTCAACCTCAACCATCACCTCAACCACCAGTGCAAGATGATCATCATATGTTCTCTGACTTCAATTCTTCACA GGAGTTGGTTGGAGGAATGATGAAGATTGTTCCTTCGGATGCGGATAATGAAACAGATTATTGGCTTCTTTCAGATGCTGCTGATATTAGCATTACAGAC ATGTGGAAGGCAGATGGTATGCTTGCAGATTTTTATCCTTCCCCGTCGACTCCTCCTCGACCTGTAAGTCCAACACAACTCACTCAGTTCAGCATTTCGA CCTTCCGTTGCATAGTTTTTTCACTGATGCTCCAACTAATGTTGACTGTGTAG
AA sequence Show only first row Show all	>Lus10004217 pacid=23175389 polypeptide=Lus10004217 locus=Lus10004217.g ID=Lus10004217.BGIv1.0 annot-version=v1.0 MRRHLAFVSMMPPFVAPDDYHRFSTPPASSKVADRDAEAIVVRSPAFKRKLKLDDTGIDSTKWTTNAGHTDPSSSPFQTPTKGGRTYKPKSTKANKALPQ TPVSNPGSPSTLTPSGTRYDSSLGLLTKKFVNLIKVAEDGIIDLNKAAETLEVQKRRIYDITNVLEGTGLIEKTLKNRIRWKGVGGSDSGNVDNNASLLQ AEIERLSLEEQNLDNQIREMSERLRNLSEDENNQKWLFLTEDDIKNLPCFQNQTLIAIKAPHGTTLEVPDPDEAVDYAQRRYRIILRSTMGPIDVYLVSQ FEENFEEAIDTGPSTSVDHASSSSSSVNPHMVSTQGTQKAVEPQPQPSPQPPVQDDHHMFSDFNSSQELVGGMMKIVPSDADNETDYWLLSDAADISITD MWKADGMLADFYPSPSTPPRPVSPTQLTQFSISTFRCIVFSLMLQLMLTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	0	1
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10029421 [exp]	1.0	0.8953
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	2.0	0.8617
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10002325 [exp]	14.9	0.8554
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	18.2	0.8269
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	22.4	0.7447
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	30.0	0.8357
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	36.7	0.7765
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	37.1	0.8005
AT2G26610			Transducin family protein / WD...		Lus10006655 [exp]	38.8	0.7779
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038696 [exp]	43.8	0.7084

Compare expression of checked genes

Lus10004217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.