Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36000 266 / 1e-87 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT2G34620 154 / 2e-44 Mitochondrial transcription termination factor family protein (.1) AT2G03050 149 / 1e-42 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT3G18870 122 / 2e-32 Mitochondrial transcription termination factor family protein (.1) AT2G21710 94 / 8e-21 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT1G78930 90 / 1e-19 Mitochondrial transcription termination factor family protein (.1) AT5G55580 89 / 3e-19 Mitochondrial transcription termination factor family protein (.1) AT4G14605 88 / 4e-19 Mitochondrial transcription termination factor family protein (.1) AT5G54180 68 / 2e-12 PTAC15 plastid transcriptionally active 15 (.1) AT1G61960 61 / 4e-10 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029422 [exp] 582 / 0 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10016971 [exp] 311 / 6e-105 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10021297 [exp] 308 / 7e-104 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10026612 [exp] 145 / 5e-41 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10030451 [exp] 142 / 9e-40 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10032120 [exp] 134 / 1e-36 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10014567 [exp] 133 / 6e-36 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10042342 [exp] 106 / 5e-26 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1) Lus10026325 [exp] 105 / 7e-26 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072200 [exp] 325 / 5e-110 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.006G205000 [exp] 320 / 4e-108 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.011G081400 [exp] 156 / 5e-45 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.010G167400 [exp] 126 / 7e-34 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.004G150600 [exp] 116 / 3e-30 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 101 / 1e-23 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 91 / 4e-20 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 88 / 8e-19 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 86 / 2e-18 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.008G088100 [exp] 64 / 5e-13 AT2G03050 117 / 7e-34 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10004219 pacid=23175409 polypeptide=Lus10004219 locus=Lus10004219.g ID=Lus10004219.BGIv1.0 annot-version=v1.0 ATGCAGGAAACAGTGAATCTCTTCTCCACCGGGAAATCATCGATTCCGTGCTCAAACTCCGGTAATTTCTCTTCACAGAATCGTGATTTTCATTCACTTT CTAGACCTAGAATTCGCCTCCGCTTCCAAACACTATCCTTCAAAACAATCGCCACCGCCATTTCCCCTCCGCAAAAGCCATCCACGGTGCCTTCGAAGCT CCAGTCTACTCATCCTTCCCCTCTTCCGCCATCGCCGTCGTCAGATTTCCAGGAGAAGCTCTACTACCTCGACTCCATCGGCCTCGACGTGTTCTCCCTA GTCAAGGACCACCGTCCAATCCTCGTCGCGGCAAACCTCCAAGAAATCCAATCCACAGGCGATTACCTCGCATCCATGGGACTAACCTCCCAGGACTTCC GCCGAGTCGTCTACATGTGTCCCGAAATCCTCTCCGCGAGCCTCTCCTCCGTGATATCCGTCTTGACCTTCCTCCTCCGCGAGGCTGGTGTGGCCGGATC CCGCATCCGGAAGGCCATCCACCGCCGTCCGAGGCTGCTCATCTGCAGCGTTAAGCACCAGCTCCGTCCGACGTTGTACTTCCTCCAGAGCATTGGAATC GCTTCAACGCACAGGCACACGTACCTGCTGTCCTGCAGCGTGGAGGAGAAGCTCATCCCTAGGATCCAGTACTTCGAAGGGATGGGGCTGAGTTACAGAG AAGCCACGGCGATGTTCAGGAGGTTCCCCCAGCTGTTCAACTACAGCGTGTCGGAGAATGTGGAGCCGAAGCTGAATTACTTCGTGGTGGAGATGGGGAG GGAGCTGAAGGATCTGATGGAGTTTCCTCATTATTTCTCGTTTAGCTTGGAAGGCAGGATCAAGCCCAGGCATCAGAGCTGCGTCGAGTTGGGGGTTTGC TTGCCGCTGCCGTCGTTGTTGATCGGGAAAGATGAAGAGTTTCGAGAGAGACTCGAGAGGTTCAGCGAATCTAACCTGCCGATGATTTCTTCTCCGTTGA ATGGTGTGGATTTTGATTACTCGATGTTTTAG
AA sequence Show only first row Show all	>Lus10004219 pacid=23175409 polypeptide=Lus10004219 locus=Lus10004219.g ID=Lus10004219.BGIv1.0 annot-version=v1.0 MQETVNLFSTGKSSIPCSNSGNFSSQNRDFHSLSRPRIRLRFQTLSFKTIATAISPPQKPSTVPSKLQSTHPSPLPPSPSSDFQEKLYYLDSIGLDVFSL VKDHRPILVAANLQEIQSTGDYLASMGLTSQDFRRVVYMCPEILSASLSSVISVLTFLLREAGVAGSRIRKAIHRRPRLLICSVKHQLRPTLYFLQSIGI ASTHRHTYLLSCSVEEKLIPRIQYFEGMGLSYREATAMFRRFPQLFNYSVSENVEPKLNYFVVEMGRELKDLMEFPHYFSFSLEGRIKPRHQSCVELGVC LPLPSLLIGKDEEFRERLERFSESNLPMISSPLNGVDFDYSMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	0	1
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	1.0	0.9633
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	3.2	0.9005
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	6.3	0.8362
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	6.7	0.8366
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Lus10010908 [exp]	8.9	0.8512
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	9.0	0.8676
AT5G62910			RING/U-box superfamily protein...		Lus10004246 [exp]	10.4	0.8055
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	12.4	0.8337
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	14.1	0.8437
AT3G23080			Polyketide cyclase/dehydrase a...		Lus10000083 [exp]	16.0	0.8199

Compare expression of checked genes

Lus10004219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.