Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2) AT3G13580 419 / 2e-150 Ribosomal protein L30/L7 family protein (.1.2.3) AT2G01250 416 / 3e-149 Ribosomal protein L30/L7 family protein (.1.2) AT1G80750 194 / 1e-61 Ribosomal protein L30/L7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029423 [exp] 489 / 2e-178 AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10021296 [exp] 475 / 1e-172 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10016970 [exp] 475 / 1e-172 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10019603 [exp] 233 / 5e-77 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1) Lus10040040 [exp] 232 / 1e-76 AT1G80750 269 / 4e-91 Ribosomal protein L30/L7 family protein (.1) Lus10003176 [exp] 73 / 1e-14 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G073200 [exp] 416 / 3e-149 AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2) Potri.008G008000 [exp] 414 / 2e-148 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.010G250900 [exp] 411 / 2e-147 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.018G140300 [exp] 399 / 2e-142 AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.001G047400 [exp] 238 / 4e-79 AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1) Potri.003G180700 [exp] 233 / 4e-77 AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00327 [flax] [poplar] Ribosomal_L30 Ribosomal protein L30p/L7e PF08079 [flax] [poplar] Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004220 pacid=23175388 polypeptide=Lus10004220 locus=Lus10004220.g ID=Lus10004220.BGIv1.0 annot-version=v1.0 ATGGCCGAAGTAGCTAAGGCAGTCGCCATTGTTCCCGAGTCTGTATTGAAGAAGAGGAAGAGAAATGAGGAGTGGGCATTGGCAAAGACCGAGGCCACTC TTGCTCAGAAGAAGAAGAATTCCGAGAACAGGAAGATCATCTTCAAGAGGGCTGAGCAGTACGCCAAGGAGTACAGTGAGCAGGAAAGGGAGTTGATCAG GTTGAAAAGAGAGGCTAAGCTGAAGGGAGGTTTCTATGTCAGCCCAGAAGCCAAATTGCTCTTCATTGTCCGTATCCGTGGTATCAACGCTGTTGACCCA AAAACCAAGAAGATCTTGCAGCTCCTCCGTCTGAGACAGATCTTCAATGGAGTGTTCCTTAAGGTCAACAAGGCCACAGTCAATATGCTGCGCAGGGTTG AGCCATATGTGACCTATGGTTACCCTAATCTGAAGAGCGTTAAGGAATTGATCTACAAGAGAGGTTTCGGAAAGCTTGACAAGCAGAGAATTCCCTTGAC CGAGAATGCCATTGTTGAGAAGGGTCTCGGAAAGTTTGGGATCATCTGCGTGGAAGACTTGATCCACGAGATCATGACCGTCGGCCCGCACTTCAAGGAA GCTAACAACTTCCTGTGGCCATTCAAACTCAGCGCTCCATTGGGTGGGTTGAAGAAGAAGAGAAACCATTACGTGGAAGGTGGCGATGCCGGAAACCGAG AGGACTTCATCAACGCTCTCATCAGGAGAATGAACTAA
AA sequence Show only first row Show all	>Lus10004220 pacid=23175388 polypeptide=Lus10004220 locus=Lus10004220.g ID=Lus10004220.BGIv1.0 annot-version=v1.0 MAEVAKAVAIVPESVLKKRKRNEEWALAKTEATLAQKKKNSENRKIIFKRAEQYAKEYSEQERELIRLKREAKLKGGFYVSPEAKLLFIVRIRGINAVDP KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLDKQRIPLTENAIVEKGLGKFGIICVEDLIHEIMTVGPHFKE ANNFLWPFKLSAPLGGLKKKRNHYVEGGDAGNREDFINALIRRMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	0	1
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	1.0	0.9862
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	1.7	0.9789
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	2.0	0.9836
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	2.8	0.9769
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	3.7	0.9727
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	3.9	0.9739
AT5G59850			Ribosomal protein S8 family pr...		Lus10023429 [exp]	5.4	0.9499
AT1G48830			Ribosomal protein S7e family p...		Lus10034909 [exp]	5.7	0.9654
AT5G52370			unknown protein		Lus10016449 [exp]	5.7	0.9490
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	6.3	0.9723

Compare expression of checked genes

Lus10004220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.