Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73260 78 / 1e-17 ATKTI1 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) AT1G17860 71 / 4e-15 Kunitz family trypsin and protease inhibitor protein (.1) AT1G73325 63 / 3e-12 Kunitz family trypsin and protease inhibitor protein (.1) AT1G73330 50 / 1e-07 ATDR4 drought-repressed 4 (.1) AT3G04320 40 / 0.0003 Kunitz family trypsin and protease inhibitor protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029429 [exp] 388 / 2e-139 AT1G73260 77 / 4e-17 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Lus10039209 [exp] 88 / 2e-21 AT1G17860 179 / 6e-57 Kunitz family trypsin and protease inhibitor protein (.1) Lus10039208 [exp] 86 / 1e-20 AT1G17860 172 / 2e-54 Kunitz family trypsin and protease inhibitor protein (.1) Lus10039210 [exp] 84 / 8e-20 AT1G17860 179 / 4e-57 Kunitz family trypsin and protease inhibitor protein (.1) Lus10039163 [exp] 84 / 9e-20 AT1G17860 167 / 4e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013732 [exp] 83 / 1e-19 AT1G17860 166 / 4e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10007889 [exp] 83 / 2e-19 AT1G17860 163 / 1e-50 Kunitz family trypsin and protease inhibitor protein (.1) Lus10013770 [exp] 82 / 7e-19 AT1G17860 166 / 6e-52 Kunitz family trypsin and protease inhibitor protein (.1) Lus10011090 [exp] 81 / 9e-19 AT1G17860 161 / 4e-50 Kunitz family trypsin and protease inhibitor protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G000400 [exp] 207 / 4e-68 AT1G73260 91 / 9e-23 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Potri.001G309900 [exp] 185 / 2e-59 AT1G17860 90 / 2e-22 Kunitz family trypsin and protease inhibitor protein (.1) Potri.007G111600 [exp] 185 / 2e-59 AT1G73260 70 / 8e-15 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Potri.019G006900 [exp] 177 / 2e-56 AT1G73260 79 / 6e-18 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Potri.007G111500 [exp] 177 / 3e-56 AT1G73260 79 / 5e-18 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Potri.007G111800 [exp] 168 / 1e-52 AT1G73260 79 / 3e-18 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Potri.007G111700 [exp] 165 / 9e-52 AT1G73260 70 / 1e-14 ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, kunitz trypsin inhibitor 1 (.1) Potri.004G067900 [exp] 91 / 1e-22 AT1G17860 183 / 2e-58 Kunitz family trypsin and protease inhibitor protein (.1) Potri.017G153200 [exp] 88 / 2e-21 AT1G17860 191 / 5e-62 Kunitz family trypsin and protease inhibitor protein (.1) Potri.017G153400 [exp] 83 / 1e-19 AT1G17860 223 / 1e-74 Kunitz family trypsin and protease inhibitor protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF00197 [flax] [poplar] Kunitz_legume Trypsin and protease inhibitor
Representative CDS sequence Show only first row Show all	>Lus10004223 pacid=23175396 polypeptide=Lus10004223 locus=Lus10004223.g ID=Lus10004223.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAACTACAATCATTCTCCACACCATGATGATCTGGCTAATCATAGCCATATCCGTCACGGCGCAATCCACCTCCCCATCGATCCTTGACA CAGCCGGGCAGCCGGTGAGGCGCGGGGTGAACTACTACATCCTCCCTGCAATAACCGACGTTGCGGGAGGGCTAACCCTGATGCCCCGCAACGCCACGAG CAACTGCCCCCTCTACGTGGGACAGGTGCCCCTTGCCCAGGTCGTGTCCCAGGGGCTCCCTGCAACTTTCGCCCCGTTCGCCAACGGAGAGAACATTGTG AGGGAGTCAAGGGACCTGACCGTTACGTTCTCGGCCGCCACAACATGCCAACAGGGGACGTCGTGGGTGATTGGAGAAGAGGATGCTCAGAGTCGGAGGA GGCTTCTCAGGGCCGGTGGTGGGACGACACCGAGTTACTTCAGGATTGATAGGAACACGACGACTAATGCGTATCAGTTCGTGTGGTGTCCTGGGGAGTC GTGCACTGCCCCGAACTGCGGGAGGCCGAGGTGCGGAGCTGCTGGGATCTTGGTTCGCGGTCGGACTAGGTTCTTGGCACTGGATGGCCCTGCTTTCCCT TTTCGATTCATGAGGGCTTAG
AA sequence Show only first row Show all	>Lus10004223 pacid=23175396 polypeptide=Lus10004223 locus=Lus10004223.g ID=Lus10004223.BGIv1.0 annot-version=v1.0 MASSTTIILHTMMIWLIIAISVTAQSTSPSILDTAGQPVRRGVNYYILPAITDVAGGLTLMPRNATSNCPLYVGQVPLAQVVSQGLPATFAPFANGENIV RESRDLTVTFSAATTCQQGTSWVIGEEDAQSRRRLLRAGGGTTPSYFRIDRNTTTNAYQFVWCPGESCTAPNCGRPRCGAAGILVRGRTRFLALDGPAFP FRFMRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10004223 [exp]	0	1
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	1.4	0.9890
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	2.0	0.9861
AT4G01575			serine protease inhibitor, Kaz...		Lus10030164 [exp]	2.6	0.9811
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	3.5	0.9847
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006552 [exp]	8.1	0.9760
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	10.8	0.9855
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10004808 [exp]	11.4	0.9784
					Lus10003173 [exp]	12.0	0.9790
AT1G35210			unknown protein		Lus10010343 [exp]	13.8	0.9847
AT5G39160			RmlC-like cupins superfamily p...		Lus10032016 [exp]	14.1	0.9844

Compare expression of checked genes

Lus10004223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.