Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11570 515 / 0 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 493 / 3e-174 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G06080 345 / 3e-115 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 340 / 4e-113 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT5G20590 311 / 1e-101 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 296 / 6e-96 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT1G60790 291 / 4e-93 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT1G48880 276 / 8e-89 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT5G06700 281 / 9e-89 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 279 / 1e-88 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017004 [exp] 598 / 0 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10021328 [exp] 595 / 0 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10029430 [exp] 595 / 0 AT3G11570 443 / 2e-155 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10000250 [exp] 492 / 3e-175 AT3G11570 428 / 7e-150 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 345 / 3e-115 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 334 / 4e-111 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 328 / 9e-109 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10028025 [exp] 319 / 7e-105 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10003734 [exp] 309 / 3e-101 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074800 [exp] 543 / 0 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.008G203900 [exp] 348 / 1e-116 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G054400 [exp] 334 / 5e-111 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.006G208251 [exp] 305 / 3e-101 AT3G11570 280 / 1e-91 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.010G043300 [exp] 300 / 1e-96 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.018G133000 [exp] 295 / 2e-95 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G071500 [exp] 295 / 2e-95 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.T171301 [exp] 283 / 5e-91 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 283 / 5e-91 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.002G195800 [exp] 285 / 1e-90 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10004225 pacid=23175392 polypeptide=Lus10004225 locus=Lus10004225.g ID=Lus10004225.BGIv1.0 annot-version=v1.0 ATGGAAAATAACAACAATAACCCACAAAAGCTTTCGCCGCCGTTTCTTTTCCGGCCGGTGATCATCCGGCGGGAGATCGTCTACGCCTTCATGTCCTGTC TCCTGATCATCCTCTCTTCCCTCTACGCTCTCGATCTCCTCGACCCGGGCCCCTTCTTTCGGGTCGGGTTCTTTCTGCCGACGACTACTCCTCCGACGCC GCCGATCAGGGTTTGTGATCGGGGATACGACGACGGCCAGTGGGTCCGGCGGGATGATGAAAGATCGTATTATTACGCGGAGGATTGTCCGTTTCTTGAT CCCGGGTTCCGGTGTCGTCGGAACGGGAGGGCTGACGTGGAATTTCTCAACTGGCGGTGGCAGCCTAAGGGGTGTGATTTGCCACGATTCAACGCGACGG ACTTTCTGGAGAGGGCGAGGAACGGCAGAGTAGTGTTCGCCGGAGACTCGATCGGCCGGAACCAATGGGAGTCATTCCTCTGCATGCTAGCGCAGGGAGT CTCCAATGTCTCCACAATCTACGAAGTGAACGGAAACCCGATCTCCAAGCACAGAGGGTTCCTCATCATGCGTTTCAGCGAGTACAACCTCACAGTCGAA TACTATCGAGTTCCCTTTCTGGTAATCATCGGCCGACCGCCTCAAAATTCGCCCCCTGAAGTCAAGACAGCGATCAAGGTCGACCAGCTGCACTGGTTCT CTCGACGGTGGGTCGGAGCAGATGTGCTCGTGTTCAATGCTGGACATTGGTGGAATGAGTACAAAACTATCTACATGTACGGTACCATGTTCAACAAGGG TCACTATTTCGAAGAAGGCGGCGAGGTTAACAAGTCGATGGGTGTTATCGAAGCATTCGAGAAATCGCTGCGAACCTGGAAGAAATGGGTGACAGAGAAT CTGGATGGTGAGAAGAGTCACGTTTTCTTCCGCAGCTATTCTCCTGCACATTACAGGAATGGTACGTGGAACGATGGAGGACACTGCGATTCGGACCTGC AACCAGAGACGGATCCGAAGTTTCTGGAACCCGAGCCGGTGAACAATCGGCCGATTGCTGATGTGGTTGTGCAGATGAACAAGAAAGTCCAGTACTTGAA CATCACATATCTGACGGAGTATAGATCAGATGGTCACCCGTCGCGCCACCGTGAGCCAGGAACTCCACCGGATGCTCCACAGGACTGCAGCCACTGGTGC CTTCCGGGAATCCCGGATGTGTGGAATGAAGTGATGTTTGCTCAGTTGCTGTCAATGGGATTCAAAACCAAGTGA
AA sequence Show only first row Show all	>Lus10004225 pacid=23175392 polypeptide=Lus10004225 locus=Lus10004225.g ID=Lus10004225.BGIv1.0 annot-version=v1.0 MENNNNNPQKLSPPFLFRPVIIRREIVYAFMSCLLIILSSLYALDLLDPGPFFRVGFFLPTTTPPTPPIRVCDRGYDDGQWVRRDDERSYYYAEDCPFLD PGFRCRRNGRADVEFLNWRWQPKGCDLPRFNATDFLERARNGRVVFAGDSIGRNQWESFLCMLAQGVSNVSTIYEVNGNPISKHRGFLIMRFSEYNLTVE YYRVPFLVIIGRPPQNSPPEVKTAIKVDQLHWFSRRWVGADVLVFNAGHWWNEYKTIYMYGTMFNKGHYFEEGGEVNKSMGVIEAFEKSLRTWKKWVTEN LDGEKSHVFFRSYSPAHYRNGTWNDGGHCDSDLQPETDPKFLEPEPVNNRPIADVVVQMNKKVQYLNITYLTEYRSDGHPSRHREPGTPPDAPQDCSHWC LPGIPDVWNEVMFAQLLSMGFKTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	0	1
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	1.7	0.9745
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	3.0	0.9676
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	4.2	0.9530
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	6.3	0.9713
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	8.4	0.9639
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10014480 [exp]	9.5	0.9477
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	11.1	0.9659
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	12.5	0.9636
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10005755 [exp]	17.3	0.9320
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10018723 [exp]	17.6	0.9586

Compare expression of checked genes

Lus10004225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.