Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06250 173 / 2e-51 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT3G11580 158 / 3e-46 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT2G36080 155 / 7e-45 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2) AT1G01030 150 / 6e-42 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT3G61970 145 / 2e-40 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 144 / 4e-40 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 136 / 1e-36 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G25730 133 / 1e-35 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G25560 133 / 3e-35 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT4G01500 130 / 1e-34 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021326 [exp] 166 / 2e-48 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10041487 [exp] 140 / 5e-38 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 132 / 3e-36 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10021707 [exp] 123 / 1e-31 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10026212 [exp] 100 / 1e-24 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10029431 [exp] 92 / 6e-23 AT2G36080 69 / 3e-16 AP2/B3-like transcriptional factor family protein (.1.2) Lus10036282 [exp] 90 / 7e-20 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10029430 [exp] 82 / 5e-17 AT3G11570 443 / 2e-155 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10022741 [exp] 67 / 1e-11 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208100 [exp] 173 / 2e-50 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2) Potri.016G074500 [exp] 167 / 5e-48 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2) Potri.002G181600 [exp] 152 / 6e-42 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 150 / 4e-41 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.001G452200 [exp] 149 / 1e-40 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.014G107200 [exp] 147 / 5e-40 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.008G117100 [exp] 133 / 2e-35 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.010G129200 [exp] 134 / 3e-35 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.018G109201 [exp] 108 / 1e-26 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 108 / 2e-26 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10004226 pacid=23175382 polypeptide=Lus10004226 locus=Lus10004226.g ID=Lus10004226.BGIv1.0 annot-version=v1.0 ATGTCCAGATTACCATCTTACCCCTGGCCGCCATCCACCGCCGCCACTGCCGCCGCCGACGATTCTTCTCCTTCTTCTTTGAACACATTCATCGACAAGG AGCCCATGTTCGAGAAGCCGCTGACCCCCTCCGACGTGGGGAAGCTAAACAGGCTGGTGATTCCGAAGCAGTACGCCGAACGGTACTTCCCGATGGACCA TCAGCAGCAGCAATTGGCCGGCGCCGGCGGCGAGTCTTCGTCTTCGTCGTCGACGGTGCTGAGTTTCGAGGACGAGTCGGAGGCGGGGAAATGCTGGAAG TTCAGGTACTCGTACTGGACAAGCAGCCAGAGCTACGTGCTGACCAAAGGATGGAGCCGGTTCGTCAAGGAGAAGCGGCTCGACGCCGGTGACGTCGTTC TGTTCGAGCGAGGGGTTAAAGATCATCGGGATAGGCTGTTCATTGGGTGGAGGAAGAGAGGGACGAATGCGGTGACAGCGACGAATGTGATTAGTAATGA GGGTTATGGTGCTGTTGGTGATTATGCAAATCGGCATTATATTCAGCAAGGCGGAGGAGCTGCGGCGGCGCAGCCTTATCTTGAAGACGGTGGCGGTGGT GCTGGTCAAGGAGAAGGAGAAGGAGAAAGAGTAGCGACAGAAGGGAGTTTCAATAGGCGTTTGAGACTGTTCGGTGTGAATATGGAATGGCAGCCAGAAA ATGAGGATACTGACAACCAACCTTCTCCGTCAGCAACAACCGATTATCCAATGTCAACAAGCAGTACATCCGGTGGTGGCTCTCGCCTCCATCACCCCCA AAACTATTCTTCACTTCCTAATTATAATCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNATTCGAATTGGAAAATTGAAATTTGTATCAACTTAA
AA sequence Show only first row Show all	>Lus10004226 pacid=23175382 polypeptide=Lus10004226 locus=Lus10004226.g ID=Lus10004226.BGIv1.0 annot-version=v1.0 MSRLPSYPWPPSTAATAAADDSSPSSLNTFIDKEPMFEKPLTPSDVGKLNRLVIPKQYAERYFPMDHQQQQLAGAGGESSSSSSTVLSFEDESEAGKCWK FRYSYWTSSQSYVLTKGWSRFVKEKRLDAGDVVLFERGVKDHRDRLFIGWRKRGTNAVTATNVISNEGYGAVGDYANRHYIQQGGGAAAAQPYLEDGGGG AGQGEGEGERVATEGSFNRRLRLFGVNMEWQPENEDTDNQPSPSATTDYPMSTSSTSGGGSRLHHPQNYSSLPNYNHXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRIGKLKFVST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10004226 [exp]	0	1
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028442 [exp]	6.6	0.8308
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026234 [exp]	9.6	0.7977
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10031486 [exp]	14.8	0.7328
					Lus10007207 [exp]	39.6	0.7530
AT1G66880			Protein kinase superfamily pro...		Lus10009150 [exp]	70.1	0.7609
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	78.5	0.7463
AT1G20180			Protein of unknown function (D...		Lus10017348 [exp]	103.6	0.7378
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10028786 [exp]	108.6	0.7458
AT1G06330			Heavy metal transport/detoxifi...		Lus10001892 [exp]	146.7	0.6923
AT1G09740			Adenine nucleotide alpha hydro...		Lus10009272 [exp]	229.2	0.7051

Compare expression of checked genes

Lus10004226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.