Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15330 367 / 1e-125 AtPV42a Cystathionine beta-synthase (CBS) protein (.1) AT1G80090 342 / 3e-115 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029432 [exp] 602 / 0 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10037342 [exp] 152 / 7e-45 AT1G15330 81 / 7e-19 Cystathionine beta-synthase (CBS) protein (.1) Lus10011457 [exp] 42 / 0.001 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10004227 pacid=23175403 polypeptide=Lus10004227 locus=Lus10004227.g ID=Lus10004227.BGIv1.0 annot-version=v1.0 ATGCAACAACAGCCAGAGAAAGTCTCCCCGGCGCCGGTGAAGGCGGCCGGAGCAAGGCTGGTGGACAAGAAAGTGAAGGAGCTACTGTCCTCGACGTCGG TGGAGAGCAAGAGGCTGGTGGAGGGTCCCCACACCGCGTCCCTGGCCGACACGATGAACACTCTGGTCGCCAACCTGGTCGTGGCGGTGCCCGTGGCGGC GCCGCCGGGTCAGTGGATCGGAGCGGGCGGGTCGATGATTATGGAGTCCGACAAGCAGACCGGAGTGGCGAGGAAGCATTATATTGGGATGGTTACTATG CTGGATATCTTGGCGCATATTGCTGATGGTGATCAGGATGATCAGATGAACGGCGGCGCCGGCGGAGGGAGGGGTGGGTCGGCGTGTTTCTCCGATGAAC AGCTGGCGGCGAAGATGGCGGCTCCGGTTTCTCAGATTATTGGGCATTGTCTTGAAGGGCTCAGTCTTTGGACTCTTAACCCAGGAACCAGCATCATAGA TTGTATGGAAGTGCTGAGCAAGGGGATTCACCGGGCACTGGTGCCGGTGGAGAGCCATATGGCGAACGTGGCCGGAGTGGAGCTAGTGGAGTCGGCTTCG AGCTACAGGATGTTGACCCAGATGGACTTGCTCAAGTTCTTCATACAGGAGACGGAGAATCATCCGGACCATCACCAGGAGATTCGGAGCATTATGGTCC GCCCCTTGCGAGACCTTGGAGCAGTGAACGAGTGTGTTTATGCCATAACCGGACGAACGAGAGTCATTGATGCCATCAAGTGCATGAAGGCAGCTCTGTT GAATGCTGTTCCCATCGTCGTTGCTTCCAACTCTAGCGAGGATGATTCGAGGCAGCTCATCAATGGGAAAGGGAGGAAGCTGATAGGGACATTCTCGGCG ACCGACCTACGAGGGTGGCACTTCGCCACTCTACAAACATGGCTGCCATTGACCGCCCTGGAGTTCACCGAGACCGTGCCTACATCGGCCATATACCCAG CTCCAAACTCGCCCAACATGGAGTTGAGGGAGCTCGTGACCGCCACCGCGGATTCCACCCTCGAGGAAGTCATCCAGAAGGTGGTTACCAAGCACGTCCA CCGAGTATGGGTGGTGGACTCGCAGGGTCTCCTGACAGGGCTCGTCTCCTTGACCGACATCATCAAGGCATTGAGGGGATCTTTGCTCTTTGTGAATGAA TGA
AA sequence Show only first row Show all	>Lus10004227 pacid=23175403 polypeptide=Lus10004227 locus=Lus10004227.g ID=Lus10004227.BGIv1.0 annot-version=v1.0 MQQQPEKVSPAPVKAAGARLVDKKVKELLSSTSVESKRLVEGPHTASLADTMNTLVANLVVAVPVAAPPGQWIGAGGSMIMESDKQTGVARKHYIGMVTM LDILAHIADGDQDDQMNGGAGGGRGGSACFSDEQLAAKMAAPVSQIIGHCLEGLSLWTLNPGTSIIDCMEVLSKGIHRALVPVESHMANVAGVELVESAS SYRMLTQMDLLKFFIQETENHPDHHQEIRSIMVRPLRDLGAVNECVYAITGRTRVIDAIKCMKAALLNAVPIVVASNSSEDDSRQLINGKGRKLIGTFSA TDLRGWHFATLQTWLPLTALEFTETVPTSAIYPAPNSPNMELRELVTATADSTLEEVIQKVVTKHVHRVWVVDSQGLLTGLVSLTDIIKALRGSLLFVNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10004227 [exp]	0	1
AT4G28556		RIC7	PAK-box/P21-Rho-binding family...		Lus10008243 [exp]	3.3	0.8704
AT2G24130			Leucine-rich receptor-like pro...		Lus10022180 [exp]	5.7	0.8673
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	7.9	0.8898
AT5G22210			unknown protein		Lus10043407 [exp]	8.9	0.8429
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	22.8	0.8234
					Lus10027563 [exp]	25.9	0.8310
AT5G18840			Major facilitator superfamily ...		Lus10033995 [exp]	26.3	0.8897
AT5G41761			unknown protein		Lus10012634 [exp]	50.2	0.8755
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	57.2	0.8657
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	58.6	0.8701

Compare expression of checked genes

Lus10004227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.