Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50090 132 / 1e-39 unknown protein AT1G60010 108 / 5e-30 unknown protein AT5G62900 105 / 6e-29 unknown protein AT1G10530 97 / 2e-25 unknown protein AT5G67620 85 / 6e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042139 [exp] 228 / 5e-77 AT5G50090 141 / 4e-43 unknown protein Lus10043461 [exp] 131 / 7e-39 AT5G50090 146 / 7e-45 unknown protein Lus10034124 [exp] 128 / 2e-37 AT5G50090 147 / 3e-45 unknown protein Lus10029193 [exp] 115 / 8e-33 AT1G60010 178 / 1e-57 unknown protein Lus10010708 [exp] 110 / 9e-31 AT1G60010 177 / 3e-57 unknown protein Lus10030651 [exp] 108 / 7e-30 AT1G60010 171 / 4e-55 unknown protein Lus10030835 [exp] 100 / 5e-27 AT1G60010 150 / 2e-47 unknown protein Lus10019264 [exp] 81 / 4e-19 AT5G67620 163 / 5e-51 unknown protein Lus10011549 [exp] 40 / 0.0006 AT5G67620 90 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072501 [exp] 135 / 2e-40 AT5G50090 152 / 4e-47 unknown protein Potri.012G077300 [exp] 123 / 8e-36 AT5G50090 168 / 1e-53 unknown protein Potri.008G146500 [exp] 110 / 3e-30 AT1G60010 189 / 3e-61 unknown protein Potri.010G095400 [exp] 103 / 6e-28 AT1G60010 187 / 5e-61 unknown protein Potri.007G005600 [exp] 93 / 5e-24 AT5G67620 184 / 7e-60 unknown protein Potri.013G153100 [exp] 39 / 0.0008 AT2G30230 189 / 5e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004229 pacid=23177825 polypeptide=Lus10004229 locus=Lus10004229.g ID=Lus10004229.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCAAGCCGTCGACGCTGCAACACTGGTGATCCAGCACCCCAACGGCAAAGTCGACAATCTATACTGGTCCGTTACCGCTGCCGAAGTCA TGAAAACAAACCCCGGCCACTGCGTCGCCCTCCTCCTCTCCACCACCTTGTATCCTCCTCCTCCTCCCCCCACTGCCCCCGCCGCCTCTCAACAAAACCG CCCTCCTCCGAATTCCTCCGGACCGGTGAGGCTGACGAGGATTAAGCTCCTCCGCCCGACGGACATGCTCACTCTCGGCCACGTTTACCGCCTCATCACA AACCAAGAGGTAATGAAAGGATTGTTGGCGAAGAAGCAATCAAAGCAGCAAAGCCAAGATCATCATCATCATCCTATAGTAGAACAGAGTAGTAGTTGTT CCTCTACTGAGCCGTTACTAAAGTCGGAAGATTCATCTAGAAGATCTCTAAAGAAGAAGGAGAAGAACAGAACGGCGTCGTGGCAGCCATCGCTACACAG CATCTTGGAATCTGCAGCAGGAGGAAGCAGTAGTATTGGAATCTGA
AA sequence Show only first row Show all	>Lus10004229 pacid=23177825 polypeptide=Lus10004229 locus=Lus10004229.g ID=Lus10004229.BGIv1.0 annot-version=v1.0 MGNCQAVDAATLVIQHPNGKVDNLYWSVTAAEVMKTNPGHCVALLLSTTLYPPPPPPTAPAASQQNRPPPNSSGPVRLTRIKLLRPTDMLTLGHVYRLIT NQEVMKGLLAKKQSKQQSQDHHHHPIVEQSSSCSSTEPLLKSEDSSRRSLKKKEKNRTASWQPSLHSILESAAGGSSSIGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50090			unknown protein		Lus10004229 [exp]	0	1
AT2G02410			unknown protein		Lus10042400 [exp]	2.0	0.8901
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	2.8	0.9017
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	6.0	0.8941
AT4G34270			TIP41-like family protein (.1)		Lus10026859 [exp]	7.0	0.8746
AT1G51405			myosin-related (.1)		Lus10009954 [exp]	8.1	0.8227
AT4G21110			G10 family protein (.1)		Lus10035562 [exp]	11.0	0.8690
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	11.7	0.8932
AT3G11750		FOLB1	Dihydroneopterin aldolase (.1)		Lus10013600 [exp]	12.1	0.8475
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10014331 [exp]	12.5	0.8294
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10036210 [exp]	12.7	0.8723

Compare expression of checked genes

Lus10004229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.