Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27520 515 / 0 Glycosyl hydrolase family 47 protein (.1) AT5G43710 221 / 6e-66 Glycosyl hydrolase family 47 protein (.1) AT1G30000 98 / 5e-22 MNS3 alpha-mannosidase 3 (.1) AT3G21160 73 / 8e-14 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G51590 71 / 3e-13 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042143 [exp] 652 / 0 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 222 / 4e-66 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 212 / 6e-63 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10042830 [exp] 100 / 1e-22 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 92 / 4e-20 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1) Lus10034820 [exp] 80 / 6e-16 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10035727 [exp] 76 / 1e-14 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 72 / 2e-13 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 71 / 5e-13 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071400 [exp] 573 / 0 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 306 / 2e-98 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 222 / 1e-66 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.004G132300 [exp] 96 / 2e-21 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.018G141100 [exp] 72 / 2e-13 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.008G007500 [exp] 69 / 3e-12 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10004233 pacid=23177830 polypeptide=Lus10004233 locus=Lus10004233.g ID=Lus10004233.BGIv1.0 annot-version=v1.0 ATGGAGGGTGAAACTGCCGAAACTAGCACTTCAGGATGTGGTTCTCTAATACTTGAAATGGGAGCATTGTCAAGATTAACCGGCGACCCCAGATATGAAT TTGCAGCTTTACGTGCTCTTAGGAAGTTGTGGAGTATGCGTAGTTCATTGAACTTATTTGGAACGACATTGGATGTGACAACTGGACAATGGATTGAACA TTCGTCTGGAATTGGGGCCGGTGTTGATTCTTTCTATGAGTATCTAGTCAAGGCTCACATCCTTTTTGGAGAATGTTCCAGACTGCTTATCAAGCTGTGC AGAAGTACTTCAGACATGGCCCATGGTATGCATGAAGAAGCAGTTTCTGTCTTGTACCATGAAGCTGATATGAGAAGTGGAACAGCGACTTACTGGCAGC TGATTAGCCTCCAAGCATTTTGGCCTGGTTTACAGGCAAGCAGTTCATGTTTCAACATTATTTTTAGGGTTCTTGTTGGGGATATTCCAGCTGCAAATTC CTCGCACCGAGAATTCTTTTCAGTGTGGGAAAAGTTTGGGGTACTTCCGGAAAGGTACTTGCTGGACTATAAAATTGTGCATCCTACAGAGAAGTACTAT CCGTTGCGTCCTGAATTGGCCGAATCTACATTTTACCTATATCACGCCACGAAAGATCCTTGGTATCTAGAGGTGGGGGAAGCAATGGTCAACTCTCTGA ACTTATACACCAAAGTTGAGGGAGGATTTGCTAGCATCAAAGATGTGACAACCATGCAAAGAGAAGATCACCAATATATTCTTCTTTCTAACATTACAGC TTGGTGGAAAAGATGCAAGTATCTGTATCTTCTCTTTGATGATTCATTCTTAGCTGATGGAAACTATGTATTTACTACCGAGGGCCACCCTCTACCGGTG CGAAGTGATTGGCACGATCAGCTTCCAGAAGCATACATCCCATCGAATTGGACTTACATCAAGAGTCCGGTATCAACGCAACGTGCTAGTGCAATGACTC GGCAAGGTTGCCCTGCAACAAGCTTGAATCTTGGAGATGGCCGCCAGCCGATTGAGAGTGTCTGCCACATCATTGACACTCACAGCGATCACCGGTGTCT GAGGAACGAGGAGTGTGGGGTCGACGCAACTAGTTGCAGAAGAAGATCGTGTAGCATGTCTGGATACTGTGGGTTATGGCTGCGGCCATAA
AA sequence Show only first row Show all	>Lus10004233 pacid=23177830 polypeptide=Lus10004233 locus=Lus10004233.g ID=Lus10004233.BGIv1.0 annot-version=v1.0 MEGETAETSTSGCGSLILEMGALSRLTGDPRYEFAALRALRKLWSMRSSLNLFGTTLDVTTGQWIEHSSGIGAGVDSFYEYLVKAHILFGECSRLLIKLC RSTSDMAHGMHEEAVSVLYHEADMRSGTATYWQLISLQAFWPGLQASSSCFNIIFRVLVGDIPAANSSHREFFSVWEKFGVLPERYLLDYKIVHPTEKYY PLRPELAESTFYLYHATKDPWYLEVGEAMVNSLNLYTKVEGGFASIKDVTTMQREDHQYILLSNITAWWKRCKYLYLLFDDSFLADGNYVFTTEGHPLPV RSDWHDQLPEAYIPSNWTYIKSPVSTQRASAMTRQGCPATSLNLGDGRQPIESVCHIIDTHSDHRCLRNEECGVDATSCRRRSCSMSGYCGLWLRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10004233 [exp]	0	1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	1.4	0.9364
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	2.4	0.9218
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010190 [exp]	4.9	0.9039
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10021496 [exp]	4.9	0.9276
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10000807 [exp]	5.2	0.8984
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	7.0	0.9061
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	8.7	0.9085
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	9.2	0.9067
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	12.7	0.8641
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	13.4	0.8804

Compare expression of checked genes

Lus10004233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.