Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47000 383 / 2e-133 Peroxidase superfamily protein (.1) AT1G24110 380 / 1e-132 Peroxidase superfamily protein (.1) AT4G17690 379 / 9e-132 Peroxidase superfamily protein (.1) AT3G28200 367 / 3e-127 Peroxidase superfamily protein (.1) AT5G40150 360 / 3e-124 Peroxidase superfamily protein (.1) AT5G14130 278 / 5e-92 Peroxidase superfamily protein (.1) AT2G18980 259 / 7e-85 Peroxidase superfamily protein (.1) AT4G37530 256 / 9e-84 Peroxidase superfamily protein (.1.2) AT4G37520 254 / 5e-83 Peroxidase superfamily protein (.1.2) AT4G30170 243 / 8e-79 Peroxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042144 [exp] 604 / 0 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10010716 [exp] 410 / 2e-144 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10039445 [exp] 362 / 4e-125 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10029201 [exp] 304 / 1e-103 AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1) Lus10011079 [exp] 265 / 6e-87 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10012540 [exp] 249 / 8e-81 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10032035 [exp] 244 / 6e-79 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10001442 [exp] 243 / 2e-78 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10031664 [exp] 242 / 4e-78 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036100 [exp] 417 / 7e-147 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 416 / 2e-146 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 358 / 7e-124 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 329 / 2e-112 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.007G053400 [exp] 263 / 2e-86 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.017G064100 [exp] 261 / 2e-85 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.004G052100 [exp] 261 / 2e-85 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.018G089900 [exp] 256 / 8e-84 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.001G329200 [exp] 254 / 8e-83 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.011G062300 [exp] 249 / 5e-80 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10004234 pacid=23177801 polypeptide=Lus10004234 locus=Lus10004234.g ID=Lus10004234.BGIv1.0 annot-version=v1.0 ATGGCCACTCATCACCAACATCACCATTCCTCCATCCTCCTATCAATCACCATCTTCCTCTCCATACCTCTCCTCTCCGATTCCCAGCTCTCCCTCGACT ACTACAAGACCACTTGCCCCGAATTCGACAAGATCGTCAGCGAGACCATCACCACCAAACAGATCTCCAACCCCACCACAGCCGCGGCTTCTCTCCGCAT CTTCTTCCACGACTGCATGGTCGACGGTTGCGATGCGTCTGTCCTCGTCGCCCCTAACAACTTCAAGAAGGTCGAGCGCGACAACGAGCTGGACCAGGAC TTGCCCGGTGACGGATTTGATGTCGTCACCCGCGTCAAGACCGCCTTGGAGCTGGCCTGCCCCAAGACGGTCTCGTGCGCTGACATCCTCGCGGAGGTCG CGCGTGACCTCGTCGTAATGGTTGGAGGGCCCAACTATCCTGTCTTGTTGGGCCGGAAGGACAGCCTGGCCTCTCTGTCTGAAAACGTGGTACCCAACCT CCCCTTGCCTAACATGACCAATGACCGGATCATCAGCCTGTTCGAGTCCAAAGGGTTCACGATCCAGGACATGGTCGCCTTGGTTGGAGCCCACACTATA GGGTTCTCTCATTGTAAGCAGTTTGCCAAAAGGATTTACAACTTTAGTAACGAGGTGGAGACCGATCCTGAGATGAACCCGACATATGCCGCGGGTTTGA AGAATTTATGTGCTAATTACACAAAGGATCCCACAATGTCGGCTTTTAATGATCTCTACACTCCGGGAAAGTTTGACAACATGTATTACCAGAACTTGCT TAAAGGGATGGGGCTTCTGGCGTCGGATCAGTTGCTAATGGATGATCCAAGGACGAAGAAGTTTGTGGAGCTCTATGCGGCTAACCAAACCGCCTTTTTT GATGATTTTTCAAAAGGTATGGAGAAGTTAAGCGTATTGGATGTTAAGACTGGGAATGAAGGTGATGTTAGGAATAGGTGTGACGAATTTAACACTGCCA AGGCTTAA
AA sequence Show only first row Show all	>Lus10004234 pacid=23177801 polypeptide=Lus10004234 locus=Lus10004234.g ID=Lus10004234.BGIv1.0 annot-version=v1.0 MATHHQHHHSSILLSITIFLSIPLLSDSQLSLDYYKTTCPEFDKIVSETITTKQISNPTTAAASLRIFFHDCMVDGCDASVLVAPNNFKKVERDNELDQD LPGDGFDVVTRVKTALELACPKTVSCADILAEVARDLVVMVGGPNYPVLLGRKDSLASLSENVVPNLPLPNMTNDRIISLFESKGFTIQDMVALVGAHTI GFSHCKQFAKRIYNFSNEVETDPEMNPTYAAGLKNLCANYTKDPTMSAFNDLYTPGKFDNMYYQNLLKGMGLLASDQLLMDDPRTKKFVELYAANQTAFF DDFSKGMEKLSVLDVKTGNEGDVRNRCDEFNTAKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	0	1
AT2G46640			unknown protein		Lus10005993 [exp]	2.8	0.8846
					Lus10014003 [exp]	3.9	0.8552
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	4.0	0.8811
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	8.7	0.8724
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	10.5	0.8274
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	11.5	0.7957
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	11.7	0.8742
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041656 [exp]	11.7	0.8521
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10038925 [exp]	11.8	0.8427
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024577 [exp]	13.0	0.8128

Compare expression of checked genes

Lus10004234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.