Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55930 509 / 9e-177 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G26590 508 / 3e-176 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT1G09930 397 / 3e-133 ATOPT2 oligopeptide transporter 2 (.1) AT4G10770 395 / 3e-132 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G64410 393 / 8e-132 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G27730 387 / 2e-129 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 384 / 4e-128 ATOPT8 oligopeptide transporter 8 (.1) AT4G16370 376 / 4e-125 ATOPT3 oligopeptide transporter (.1) AT5G53510 369 / 2e-122 ATOPT9 oligopeptide transporter 9 (.1) AT4G24120 42 / 0.0007 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042147 [exp] 709 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 543 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 541 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 540 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 531 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 530 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 505 / 2e-175 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 500 / 1e-172 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10043161 [exp] 493 / 1e-170 AT4G26590 951 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 551 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 540 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 499 / 8e-173 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 450 / 3e-154 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.009G079500 [exp] 407 / 8e-137 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.007G056900 [exp] 393 / 2e-131 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.005G150400 [exp] 391 / 1e-130 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 390 / 4e-130 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.012G019700 [exp] 387 / 2e-129 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.003G145500 [exp] 387 / 4e-129 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10004237 pacid=23177822 polypeptide=Lus10004237 locus=Lus10004237.g ID=Lus10004237.BGIv1.0 annot-version=v1.0 ATGATCTTGGATTTGTTCAAGAAGGCAACAGCTGCAAGCAAAGCCCAGTTTGCAGACGTGCACACGAGATTGATGAAGAGGAACTATGAGGCGGTTCCAC AGTGGTGGTTTGTTGTGCTATTGGGATTGAGTTTTTATCTGGCCTTGTTTGCTGTAGAAAGTTTCAGTAAACAGCTGCAGCTTCCCTGGTGGGGACTCAT GTTTGCATGTGCCCTTGCTATGGTTTCCACTCTTCCCATCGGCATAGTTCAGGCCACCACAAACACTCAAATCGGACTGAATGTCATCACTGAGCTAATG ATAGGCTATGCTTACCCTGGGAAGCCCCTAGCCAATGTTGCTTTCAAAACTTACGGCTGCATCAGCATGTCTCAGGCTCTGACATTCGTGCAAGACTTCA AGCTCGGCCACTACATGAAAATCCCTCCCAAATCCATGTTCTTTGTCCAACTGGTGGGTACAGTAGTGGCATCGACTGTTTCCTTTGCTACAGCATGGTG GATACTCACAACCATACCGAATGTCTGCGACTTGGACGTTCTTCCAGAAGGTAATCCGTGGACATGCCCCGGATCCGACGTCTTCTACAGCTCTTCCATC ATCTGGGGAGTTGTGTCCCCACGCAGAATGTTTGGAGACCTGGGAATCTACAAAGAACAGTTCTGGTTCTTCCTTATCGGTCTGCTCGCTCCAGTTCCCG TCTGGCTGCTCTCTCGCAAATTCCCGGAGAAGCAGTGGATCAAGCTGATTCACATGCCCCTTATCCTCGGAGCTTCAGCCAGCATGCCCCCGGCTAAGGC TGTGCATTACTGGACTTGGGCGGCAGTTGGGATTTTCTTCAATTACTTCATCTACAACAGGCATAAGGGGTGGTGGGCTAGGCATGCTTATATCTTCTCT GCTGCAATGGATGCTGGCGTGGCATTCATGGGTATTCTTCTGTTTTTCGCTGTCAACTCTCATGACGTGTATGGTCCTGATTGGTGGGGGCTCGAAGCGT CAGATCATTGTACCTTAGCCAAGTGTCCCACTGCTCCTGGCGTTGTGGTCAAGGGTTGCCCTGCTGTTGCCTGA
AA sequence Show only first row Show all	>Lus10004237 pacid=23177822 polypeptide=Lus10004237 locus=Lus10004237.g ID=Lus10004237.BGIv1.0 annot-version=v1.0 MILDLFKKATAASKAQFADVHTRLMKRNYEAVPQWWFVVLLGLSFYLALFAVESFSKQLQLPWWGLMFACALAMVSTLPIGIVQATTNTQIGLNVITELM IGYAYPGKPLANVAFKTYGCISMSQALTFVQDFKLGHYMKIPPKSMFFVQLVGTVVASTVSFATAWWILTTIPNVCDLDVLPEGNPWTCPGSDVFYSSSI IWGVVSPRRMFGDLGIYKEQFWFFLIGLLAPVPVWLLSRKFPEKQWIKLIHMPLILGASASMPPAKAVHYWTWAAVGIFFNYFIYNRHKGWWARHAYIFS AAMDAGVAFMGILLFFAVNSHDVYGPDWWGLEASDHCTLAKCPTAPGVVVKGCPAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10004237 [exp]	0	1
					Lus10017410 [exp]	1.4	0.8025
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10037499 [exp]	4.1	0.7241
					Lus10041736 [exp]	5.5	0.7373
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004855 [exp]	5.8	0.8019
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028741 [exp]	6.5	0.7837
AT4G03220			Protein with RNI-like/FBD-like...		Lus10018509 [exp]	7.3	0.6398
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	8.9	0.7815
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	10.0	0.7815
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	11.0	0.7815
					Lus10033096 [exp]	11.8	0.7815

Compare expression of checked genes

Lus10004237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.