Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74920 502 / 4e-178 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 491 / 9e-174 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 264 / 9e-85 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 245 / 3e-77 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 237 / 5e-74 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G79440 208 / 4e-63 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 142 / 2e-38 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G24270 126 / 9e-33 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 115 / 1e-28 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT1G44170 105 / 2e-25 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034115 [exp] 530 / 0 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 529 / 0 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10043470 [exp] 481 / 5e-170 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042148 [exp] 460 / 3e-162 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004239 [exp] 382 / 1e-131 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023625 [exp] 248 / 2e-78 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 247 / 3e-78 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 233 / 2e-72 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 231 / 7e-72 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070600 [exp] 520 / 0 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 519 / 0 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G078700 [exp] 239 / 6e-75 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 236 / 1e-73 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 233 / 1e-72 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.018G075000 [exp] 228 / 6e-71 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.010G174000 [exp] 209 / 3e-63 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.008G106000 [exp] 146 / 2e-39 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.006G186800 [exp] 131 / 2e-34 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G109700 [exp] 130 / 5e-34 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10004238 pacid=23177805 polypeptide=Lus10004238 locus=Lus10004238.g ID=Lus10004238.BGIv1.0 annot-version=v1.0 ATGGCCACGTGGAAAGTGGCTCCTGCTTTGGCTGCTGGGTGTACTGCAATTCTGAAGCCATCTGAGCTGTCATCTCTTACCTGTTTGGAACTTGCTGAGA TTTGTCAAGAGGTTGGTCTTCCTAGTGGTGTCCTCAACATTCTAACTGGATTGGGTCCTGAAGCTGGTGCTCCTTTGGCCGCGCATCCTAATGTTGACAA GATTGCATTCACTGGAAGCTCAGCCACTGGTAGCCGTATAATGACTGCAGCAGCAAAATTAGTCAAACCTGTCTCTATGGAGCTTGGTGGGAAGAGCCCA ATTATTGTATTTGAGGATGTAGACCTTGACAAAGCTGCTGAATGGGCCATATTTGGATGCTTCTGGACAAATGGACAGATCTGCAGCGCTACATCCCGTC TTCTTGTACATGAAAGCATAGCCACTGAATTTCTCGACCGGGTTGTCCAATGGATAAAAAAAATCAAAATATCAGATCCTTTGGAAGAAGGCTGTAGGCT TGGTCCAGTTGTTAGTGCAGGACAGTATGAGAAAGTTCTGAAATTCATCTCAACTGCTAAAAGTGAAGGTGCCACTATTTTAACAGGTGGCGGGTGGCCA GGGGGGAAAGAGGAAGTCTTTGGGCCTGTACTATGTGTCAAAACATTTAGCATTGAAGATGAAGCCATTGACTTGGCAAATGACACCCACTATGGCTTAG CAGCTGCTGTCATCTCCAACGACGAGGAGAGGTGTGATCGTGTAAGCAAGGCTTTCCGGTCAGGTATCGTGTGGATTAACTGCTCCCAGCCATGTTTCTG TCAAGCACCTTGGGGAGGCCTCAAGCGCAGTGGGTTCGGGCGCGAAAATGGAGAATGGGGACTGAACAACTACTTGAGTGTGAAGCAAGTAACCAAGTAT ATCTCCAGTGACCCATGGGGCTGGTACCAATCTCCAGCAAAGCAGTAG
AA sequence Show only first row Show all	>Lus10004238 pacid=23177805 polypeptide=Lus10004238 locus=Lus10004238.g ID=Lus10004238.BGIv1.0 annot-version=v1.0 MATWKVAPALAAGCTAILKPSELSSLTCLELAEICQEVGLPSGVLNILTGLGPEAGAPLAAHPNVDKIAFTGSSATGSRIMTAAAKLVKPVSMELGGKSP IIVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLLVHESIATEFLDRVVQWIKKIKISDPLEEGCRLGPVVSAGQYEKVLKFISTAKSEGATILTGGGWP GGKEEVFGPVLCVKTFSIEDEAIDLANDTHYGLAAAVISNDEERCDRVSKAFRSGIVWINCSQPCFCQAPWGGLKRSGFGRENGEWGLNNYLSVKQVTKY ISSDPWGWYQSPAKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004238 [exp]	0	1
AT1G72890			Disease resistance protein (TI...		Lus10009384 [exp]	1.0	0.8527
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	5.1	0.8459
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	8.9	0.8293
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	10.5	0.8135
AT1G75860			unknown protein		Lus10034539 [exp]	11.4	0.8370
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Lus10014902 [exp]	13.4	0.8005
AT5G57910			unknown protein		Lus10035808 [exp]	19.3	0.7780
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10009818 [exp]	23.6	0.7969
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	24.3	0.7969
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	25.8	0.7765

Compare expression of checked genes

Lus10004238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.