Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74920 634 / 0 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 603 / 0 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 273 / 3e-86 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 245 / 2e-75 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 242 / 3e-74 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G79440 213 / 3e-63 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT2G14170 144 / 2e-37 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT3G66658 138 / 2e-35 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G24270 136 / 4e-35 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 127 / 7e-32 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042149 [exp] 741 / 0 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10034115 [exp] 620 / 0 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10043470 [exp] 617 / 0 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042148 [exp] 587 / 0 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004238 [exp] 382 / 1e-131 AT1G74920 533 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10029166 [exp] 246 / 8e-76 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 246 / 1e-75 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10023626 [exp] 237 / 3e-72 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10019387 [exp] 231 / 1e-68 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075600 [exp] 629 / 0 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 628 / 0 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G074100 [exp] 241 / 1e-73 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 240 / 2e-73 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.018G075000 [exp] 235 / 5e-72 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.002G189900 [exp] 236 / 6e-72 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.010G174000 [exp] 214 / 1e-63 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.001G283100 [exp] 149 / 1e-39 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G242333 [exp] 149 / 1e-39 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.009G078600 [exp] 149 / 2e-39 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10004239 pacid=23177820 polypeptide=Lus10004239 locus=Lus10004239.g ID=Lus10004239.BGIv1.0 annot-version=v1.0 ATGGCGGGAATTCCAATTCCGACGAGGCAGCTCTTCTTCGACGGGGAGTGGAGGCAGCCTGCCCTCAACAAACGCATCCCCGTCATCGGTGATATCCCAG CTGCTACTGCCGAAGATGTGGAGATTGCAGTGGAAGCTGCTCGGAGAGCTTTCAACAGTAACAAAGGCAAAGATTGGGCATTTGCCCCTGCTGCTTCTCG TGCCAAGTACTTGCGCTCCTTTGCTGCTAAGGCGCTTGATAGTGGGAAAACTTACGATGAAGCAGCAGCGGACATGGATGATGTTGCTGGATGCTTCGAG TACTATGCTGACATGGCTGAAGGTCTAGACTCGAAGCAGCGAGCTCCTGTTTCCCTTTGCATGGAAACATTCACCAGCTATGTTCTCAAGGAGCCCATTG GAGTCGTTGCAATGATTACTCCTTGGAATTACCCTCTATTGATGGCTACGTGGAAATTGGCTCCTGCTTTGGCTGCTGGGTACACTGTAATTCTGAAGCT GTCTGAGCTGGCATCTCTTACCTGCTTGGAGCTTGGTGAAATTAGTCAAGAGGTTGGTCTTCCAAGTGGTGTCCTCAACATTCTAACTGGGTTAGGCCCT GAAGCTGGTGCTCCTTTGGCTGCTCATCCCAATGTAGACAAGATTGCATTCACCGGAAGCTCAGCCACTGGAAGCTGTATAATAACTGCTGCAGCAAAAC TAGTCAAGCCGGTATCTATGGAGCTTGGTGGAAAGAGCCCGATTGTCGTGTTTGAGGATGTCGATCTTGATAAAGCTGCTGAATGGATCATGTTCGGATG CTTCTGCACGAGTGGACAGATCTGCAGTGCTACATCCCGTCTTATTGTACATGAAAGCATAGCAGCTGAATTGCTTGACCGGATTGTCAAATGGGCAAAA AACATCAAGATATCAGATCCATTTGAACAAGAATGTATGTTAGGTCCAGTTGTCAGTGCAGGGCAGTGCGAGAAAGTTCTGAAATTCATCTCAACTGCTA AAACTGAAGGTGCCACTATCTTAATAGGTGGTTATCGTCCACAGCATTTGAAGAAGGGTTACTTCATCGAACCGACCATTATAACTGATGTGACCACCTC CATGGAAATCTGGAGAGAGGAAGTATTTGGGCCTGTTCTCTGCGGCTTGGGAGCTGCCGTGATCTCCAATGATGAAGAGAGGCATTTCAGTCAGGCATGG TGTGGATTAACTGCTCGCAGCCGCAGCATCAAACGCAGTGGCTTCGGACGCGTAAACGGAGAGTGGGGACTGGACAGTTACTTGAGTGTGAAGCAAGTAA CCAAGTACATCTCCAGTGATCCATGGGGCTGGTACCAATCGCCTCCAAAGCAGTAA
AA sequence Show only first row Show all	>Lus10004239 pacid=23177820 polypeptide=Lus10004239 locus=Lus10004239.g ID=Lus10004239.BGIv1.0 annot-version=v1.0 MAGIPIPTRQLFFDGEWRQPALNKRIPVIGDIPAATAEDVEIAVEAARRAFNSNKGKDWAFAPAASRAKYLRSFAAKALDSGKTYDEAAADMDDVAGCFE YYADMAEGLDSKQRAPVSLCMETFTSYVLKEPIGVVAMITPWNYPLLMATWKLAPALAAGYTVILKLSELASLTCLELGEISQEVGLPSGVLNILTGLGP EAGAPLAAHPNVDKIAFTGSSATGSCIITAAAKLVKPVSMELGGKSPIVVFEDVDLDKAAEWIMFGCFCTSGQICSATSRLIVHESIAAELLDRIVKWAK NIKISDPFEQECMLGPVVSAGQCEKVLKFISTAKTEGATILIGGYRPQHLKKGYFIEPTIITDVTTSMEIWREEVFGPVLCGLGAAVISNDEERHFSQAW CGLTARSRSIKRSGFGRVNGEWGLDSYLSVKQVTKYISSDPWGWYQSPPKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	0	1
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	1.7	0.9720
					Lus10032472 [exp]	4.0	0.9655
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	4.7	0.9269
					Lus10011995 [exp]	5.2	0.9240
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	6.0	0.9634
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	6.0	0.9619
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	6.2	0.9636
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040245 [exp]	6.4	0.9075
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	6.7	0.9625
					Lus10002764 [exp]	7.4	0.9452

Compare expression of checked genes

Lus10004239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.