Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48120 174 / 1e-51 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042150 [exp] 311 / 1e-104 AT3G48120 183 / 3e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070100 [exp] 207 / 2e-64 AT3G48120 161 / 8e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004240 pacid=23177802 polypeptide=Lus10004240 locus=Lus10004240.g ID=Lus10004240.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGAAAGCCGCAGCTTACTACGACGAGCTCAGTCGGAAGGGAGAAGGAGCCGCCCGCTTCAAACAAGGACTAGGCTTCTCTTCCGCTCCCG ACGGCGATCCTCCTCCTCCATCAAGAGGCTCCGCGCTTCCCTCCTCGTCTTCATTCCTCTCCAACTTCGTCAGAGCATCCAGCCCCGCGCAATCCTCTAA GCTCGAGAAGGAAGCGCAGCTCCAATCAGTACAGAACAAGCTGAAAAAGAAGTCGGAAAACAACGAGTCATTTTCGGCTAGGGATTCGGATAGAAGTAAC AGAGGCCGAGAGGCGACGTCCAGTCACCGGCGTCGGTCCAGGAGTAGGGAGAGGGATAGAGGCAGAGATGGCGATAGGCATTCTAGGAGGCGAAGTAGGA GTCGAAGCCGAAGCAGAGAAAGATATCGAGAGAGACATAGGAGTAGGAGCAGGAGCAGGAGTCGTTCGCCGCGTAAGGAGGTTAGGTCGGATAGAAGGAG CCGAAGCCGGAGTTTAGCTCCCTGCTGGGAGAGGAGACGATCGGAGAAGAGCAGAAGAGAAGACGTAGGTAGAGATCGAGCAGGGAAAGCGAAGAATGAA GCTGTAGACTATGCGCGTTTCATTGAAGGTTATGACAAAATGACACAAGCTGGAAGAGTGAAAGCACGGATGAAGTTCCAGCTTAGTGACACTGCTAAAA AGGATACCACAAAAGGCAGCTCAGGTTGGGAAAGGTTTGAATTTGACCAGGATGCTCCCCTTGATGATGAGGAAGTAGAAGTCTCTTGTGCATTCCCAGC TGCGGAGGACGATACAGGAATTGTCAAGAACATGGGTCAGAGCTTTCGGTTCACGGCGGTAGAGGCAAAAAGGGAGGAGCGGGTTAAAGTAGCTCATGAT GAAGCCATGTTTGGAGCTCCTGTAGCTCGCCCTGCTTCTGATGATTCGGACAGCGAGCCTGTATTGGAAGATAAGAAGGAAACCAGTAAACCCAACCTTT CCACTAGTCTTTTGAGTGAGAAGGTGCTTGCAAAGCAACAAGGATCGTGGCGCGATCGCGCTCGTAAACCTTAA
AA sequence Show only first row Show all	>Lus10004240 pacid=23177802 polypeptide=Lus10004240 locus=Lus10004240.g ID=Lus10004240.BGIv1.0 annot-version=v1.0 MEEEKAAAYYDELSRKGEGAARFKQGLGFSSAPDGDPPPPSRGSALPSSSSFLSNFVRASSPAQSSKLEKEAQLQSVQNKLKKKSENNESFSARDSDRSN RGREATSSHRRRSRSRERDRGRDGDRHSRRRSRSRSRSRERYRERHRSRSRSRSRSPRKEVRSDRRSRSRSLAPCWERRRSEKSRREDVGRDRAGKAKNE AVDYARFIEGYDKMTQAGRVKARMKFQLSDTAKKDTTKGSSGWERFEFDQDAPLDDEEVEVSCAFPAAEDDTGIVKNMGQSFRFTAVEAKREERVKVAHD EAMFGAPVARPASDDSDSEPVLEDKKETSKPNLSTSLLSEKVLAKQQGSWRDRARKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48120			unknown protein		Lus10004240 [exp]	0	1
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10020324 [exp]	10.4	0.8148
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031772 [exp]	14.6	0.7662
AT5G41770			crooked neck protein, putative...		Lus10041477 [exp]	23.7	0.7457
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	30.2	0.7019
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	36.2	0.7367
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	39.7	0.7382
AT3G06270			Protein phosphatase 2C family ...		Lus10012768 [exp]	40.0	0.7496
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	41.1	0.7648
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031194 [exp]	49.6	0.6959
AT5G65540			unknown protein		Lus10035950 [exp]	50.7	0.7075

Compare expression of checked genes

Lus10004240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.