Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48150 895 / 0 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT2G20000 124 / 1e-29 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT3G16320 116 / 7e-27 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04240 61 / 3e-09 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56290 57 / 2e-08 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT5G37130 44 / 0.0003 Protein prenylyltransferase superfamily protein (.1) AT3G51110 43 / 0.0007 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G76630 43 / 0.0007 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G37460 43 / 0.0007 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042152 [exp] 1189 / 0 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10012968 [exp] 122 / 8e-29 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10034164 [exp] 78 / 1e-14 AT2G39090 801 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10004779 [exp] 59 / 7e-09 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 59 / 9e-09 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 59 / 2e-08 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043419 [exp] 57 / 4e-08 AT2G39090 756 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10032883 [exp] 49 / 1e-05 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10027124 [exp] 49 / 1e-05 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075000 [exp] 979 / 0 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1) Potri.018G086300 [exp] 124 / 2e-29 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.006G164000 [exp] 124 / 2e-29 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.010G248550 [exp] 92 / 2e-22 AT3G48150 97 / 2e-25 anaphase-promoting complex subunit 8 (.1) Potri.008G215100 [exp] 74 / 1e-13 AT2G39090 752 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.010G022100 [exp] 74 / 2e-13 AT2G39090 747 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.019G025600 [exp] 63 / 6e-10 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 63 / 6e-10 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G170000 [exp] 57 / 2e-08 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G473100 [exp] 56 / 9e-08 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04049 [flax] [poplar] ANAPC8 Anaphase promoting complex subunit 8 / Cdc23 CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10004242 pacid=23177791 polypeptide=Lus10004242 locus=Lus10004242.g ID=Lus10004242.BGIv1.0 annot-version=v1.0 ATGGATCCAGCCCGAAGGCAGAATGGCTTGCTAAATTCGTTGCCTTCTTCAAAGACAGAGCGCTTGGGCGCCGAGAATCAAAATTTTGAGTTTTCCACCC AAATCTTCGAGCAGAGATTCAGGACGAACAAGTTGAAGATGAAATCCAACGAGAATTATAGAAATGAACTTCGAATCGCGATTCCCCATCTCAGCGATCG TTGTCTTCATTCAGCAGCCAAATGGGCGGCGGAGCAGCTTATAGGAATCGAGCAGGACCCTGCCAAGTTCACGCCAGCGAACACCAGATTCCAGCGAGGA AGCTCCAGCATCCGACGGAGGTTCCGCACCAATGAGTTCACTTCCACTCCTTCCACCCCCATTGCTGGCGTTTCGTATGTTTCCACTCCTGTAATGGAGG AAGACGAGGCGGTGGACAACGATTTCTACCTTCTGGGTAAATCTTACTTCGATTGCCGAGAGTACAGACGGGCTGCCCATGCTCTCCGAGATCAAACTGG CAAGAAATCAGTCTTCTTGCGGAATTACGCCCTCTTTCTTGCAGGAGAGAAGCGTAAAGAAGAAGAATCGATAGAACTAGCAGAGACCTTGGGTAATAGC GGTGCCACTAACTCTCACTTGGGTGCTATCGAGAGAGATTTAGCGAACCTACGCAAGAATGGCGCGATCGATCCATTTGGGTTGTACTTGTATGGCTTAG TGCTCAAGGAGAAAGGTGACCAGAATCTTGCTCGCACTGTTCTTGTCGATTCCGTGAATAACTATCCTTGGAACTGGAGTGCCTGGTCAGAGCTACAGGC TTTGTGTCCAACTGCCGAGACCTTGAAAGGTCTCGGTCTCAGTAACCACTGGATGAAGGACTTCTTCCTTGCCAGTGCTTACCAAGAACTCAGAATGCAC AGCGAGTCCTTGGCCAAATATGAAAGTCTACTGGGCACATTTAGTAATAGCAATTATATCCAGGCTCAAATTGCGCAAGTGCAGTACAGTTTGAGGGAAT TCGACCAAGTCGAGGTAATATTTGAAGAATTGTTGAGAAACGACCCCTATAGAGTCGAAGACATGGATATGTACTCCAATGTGCTCTATGCAAAGGAGTG CTTTTCAGCACTAAGTTCCCTTGCTCACAGGGTATTCACAACGGATAAATATCGGCCTGAATCTTGTTGTATCATTGCCAACTACTACAGTTTAAAGGGG CAGCATGAGAAATCAGTCACCTACTTCAAAAGGGCTCTCAAGTTGAATAGAAACTATCTCTCTGCTTGGACACTCATGGGGCACGAGTATGTTGAAATGA AGAACACGCCTGCTGCAGTTGATGCCTATAGAAGGGCTGTGGACATAAATCCTCGAGACTATCGTGCTTGGTACGGTCTAGGGCAAGCATACGAGGTGAT GGGACTGCCTTTCTATGCGCTTCACTACTTCAAGAAGTCCATCTTCTTGCAACCCAGTGATGCTCGACTGTGGATTGCCATGGCTCACTGTTACGAGACT GATCAGCTCCAAATGGTGGAGGATGCAATCAAGTGCTATCAAAGAGCAGTGAGCTGTGACGATAAGGAAGCAATTGCCCTGCGTCAGTTGGCAAAGCTGC ATAAAGAGCTCGGCCTGTTTGAAGAGGCGGCATTTTATTATAAAAAGGACTTGGAGAGGATGGAAGCCGAGGAAAGAGAAGCGCAGAATATGGTCGAAGC TTTGTCGTTCCTTGCCCAGTATTGTAAAGACCAGAAGAGATACGAAGAAGCTGAGGTGTATTGTGCTCGTCTGATGGATTACGGTGGCCCTGAGAAAGAA ACAGCAAAGAACATACTGCGAGGATTAAGGGGTGACTCCACTTTCCCGTCGATGGATGTCGAACATTTCCGACCTTGA
AA sequence Show only first row Show all	>Lus10004242 pacid=23177791 polypeptide=Lus10004242 locus=Lus10004242.g ID=Lus10004242.BGIv1.0 annot-version=v1.0 MDPARRQNGLLNSLPSSKTERLGAENQNFEFSTQIFEQRFRTNKLKMKSNENYRNELRIAIPHLSDRCLHSAAKWAAEQLIGIEQDPAKFTPANTRFQRG SSSIRRRFRTNEFTSTPSTPIAGVSYVSTPVMEEDEAVDNDFYLLGKSYFDCREYRRAAHALRDQTGKKSVFLRNYALFLAGEKRKEEESIELAETLGNS GATNSHLGAIERDLANLRKNGAIDPFGLYLYGLVLKEKGDQNLARTVLVDSVNNYPWNWSAWSELQALCPTAETLKGLGLSNHWMKDFFLASAYQELRMH SESLAKYESLLGTFSNSNYIQAQIAQVQYSLREFDQVEVIFEELLRNDPYRVEDMDMYSNVLYAKECFSALSSLAHRVFTTDKYRPESCCIIANYYSLKG QHEKSVTYFKRALKLNRNYLSAWTLMGHEYVEMKNTPAAVDAYRRAVDINPRDYRAWYGLGQAYEVMGLPFYALHYFKKSIFLQPSDARLWIAMAHCYET DQLQMVEDAIKCYQRAVSCDDKEAIALRQLAKLHKELGLFEEAAFYYKKDLERMEAEEREAQNMVEALSFLAQYCKDQKRYEEAEVYCARLMDYGGPEKE TAKNILRGLRGDSTFPSMDVEHFRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	0	1
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	3.7	0.8752
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	4.0	0.8635
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	4.7	0.8052
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	5.9	0.8424
AT5G20170			RNA polymerase II transcriptio...		Lus10043284 [exp]	6.9	0.8316
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	13.3	0.7682
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10034133 [exp]	14.0	0.8468
AT1G04230			Protein of unknown function (D...		Lus10039489 [exp]	17.7	0.7755
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	19.3	0.7840
AT4G22350			Ubiquitin C-terminal hydrolase...		Lus10010490 [exp]	22.8	0.7972

Compare expression of checked genes

Lus10004242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.