Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70140 373 / 4e-121 ATFH8 formin 8 (.1) AT1G59910 351 / 6e-111 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 301 / 7e-94 ATFH4, FH4 formin homologue 4 (.1) AT3G25500 257 / 3e-75 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT3G05470 247 / 2e-72 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 241 / 4e-70 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT4G15200 235 / 1e-68 AFH3 formin 3 (.1.2) AT2G43800 232 / 7e-67 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 230 / 3e-66 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT5G48360 166 / 4e-44 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042154 [exp] 748 / 0 AT1G70140 377 / 1e-123 formin 8 (.1) Lus10029212 [exp] 363 / 6e-121 AT1G70140 491 / 6e-168 formin 8 (.1) Lus10010724 [exp] 316 / 3e-101 AT1G70140 442 / 2e-147 formin 8 (.1) Lus10004505 [exp] 272 / 5e-82 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 261 / 4e-77 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10029897 [exp] 256 / 4e-76 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10025195 [exp] 255 / 3e-75 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 254 / 1e-74 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10008739 [exp] 249 / 2e-72 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069800 [exp] 439 / 4e-146 AT1G70140 484 / 3e-160 formin 8 (.1) Potri.010G037900 [exp] 382 / 3e-124 AT1G70140 488 / 4e-162 formin 8 (.1) Potri.008G192900 [exp] 356 / 2e-114 AT1G70140 499 / 2e-166 formin 8 (.1) Potri.007G119900 [exp] 261 / 7e-78 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 261 / 3e-77 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 261 / 3e-77 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G140200 [exp] 258 / 4e-76 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 254 / 1e-74 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.002G240232 [exp] 253 / 1e-73 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.001G416100 [exp] 248 / 1e-72 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10004244 pacid=23177829 polypeptide=Lus10004244 locus=Lus10004244.g ID=Lus10004244.BGIv1.0 annot-version=v1.0 ATGCCATCCCCTAGCAGTAAGGCAGGTAGATCGGGATCGTTCTCTTCTTCCAGACCTCCGCTTGCCCCGAGAGGTAAACCGAGCAAGTTTAAAGGATTAG AGAAAACAGATGATAGCATTAGCATTAGCACCGATCATATGAAACTCCGGCCATTTCATTGGGACAAAGTCGTGGCGAACAATCCTGATCATTCCGTTGT TTGGGATGAGATTGAAGACGGCTCCATCAGGTTCGAGGACGGAGAGATTGAAGCGTTATTTGGATACAAGAAAGGCAGCAAGAACTCCATAAGCTCATCA GAAAAGCATAAAAACATCTCCGTAAATTCAAACAATAGAAGAGGAGGAAGCGCAGCTCAATCCCCGAATAACGGTCCGATCTTCATCCTGGATCCTAGGA AGTCCCTGAACGCGGCTATAGTTTTGAAGTCATTAGGAACGAGCCAGACGCAAATCCTGATCGCGGTCGAGGAAGGCCAAGGGATTCGCCAAGAAGTCCT CGAAAAGCTAGCCAGGATTTCGCCTACTAGAGAGGAATCCGCAAAGATTCTTCAGTTCGGTGGCGATCCGGCCAAACTTGCCGATGCGGAGTCCTTTTTG TACAACATCCTGAAGGCCGTCCCGTCAGCTTTTCTCCGAATAAATGCCATGCTCTTCAGGTTAAGCTACAGTTCTGAAATCAGGAACCTGAAGGGTTCTT TGAAAACGGTGGAATTGGGCTGCCAGGAGCTCAGGACACGCGGATTGTTCCTGAAGCTTCTGGAAGCCATTCTAAAGGCAGGTAACAAGATGAATGCTGG AACTTCGCGAGGAGATGCCAAAGGGTTTAACCTTGCAGCCTTGAGAAAGCTCTCGGATATTAAAAGCTCCGATGGTAAGACCACGCTGCTCCACTTTGTA GTGGAGCAAGTGGTCCAATTGGTCGGAAAACGACAAATCCTGAACCAGAAGGGAAACCTGAAAGAGGAAGAGATGAAAGAGGAGTTTGTATCTTTAGGGT TGAAATCAATGCGGAATCTGGGATTGGAATTCTCGAACGTAAAGAAAGCAGCGGCGATCGAGAGCAACGAATTCGTCCACGCCTGCTCGGTTCTGGAATC CAAGCAAGCGGAAATGATTCGAATCCTTTCTGGGTGCGGAGAGGAAATGAGATCGGGTCAATTCATGAGGGAAATGGAGAGGTTTTTGGAAGGGAGCGTT GAGGAGATGAAATTGGTGAGAGAAGAGCAAAGGAGAGTGATGGAGGTTGTGAAGAAAACGACGTCGTATTACCAGGCGGGAAGGAGCAGAGGAAGTAGTG GGGCAGAAGAGCAGCAGCCGCTTGAGCTGTTTGTAATTGTTAAGGATTTCCTGGAAATGGTGGATCGGGTTTGTACAGACATTTCCCGGAGTTGTAGTTT GAGGAAGAAGAAGAAGGGTGGAACAACGTCTGGTTTCTCGCCCGCGATTGGGAGTACTAGTAGTAGTTCAGGGAAAGTGCAGCAACGTGCTCCCCGGAGT TATCAGTTTCCTTCTGCTGCCATGGCTGTTGATGAATCGGATGAAGATGATGATGACTTCTGA
AA sequence Show only first row Show all	>Lus10004244 pacid=23177829 polypeptide=Lus10004244 locus=Lus10004244.g ID=Lus10004244.BGIv1.0 annot-version=v1.0 MPSPSSKAGRSGSFSSSRPPLAPRGKPSKFKGLEKTDDSISISTDHMKLRPFHWDKVVANNPDHSVVWDEIEDGSIRFEDGEIEALFGYKKGSKNSISSS EKHKNISVNSNNRRGGSAAQSPNNGPIFILDPRKSLNAAIVLKSLGTSQTQILIAVEEGQGIRQEVLEKLARISPTREESAKILQFGGDPAKLADAESFL YNILKAVPSAFLRINAMLFRLSYSSEIRNLKGSLKTVELGCQELRTRGLFLKLLEAILKAGNKMNAGTSRGDAKGFNLAALRKLSDIKSSDGKTTLLHFV VEQVVQLVGKRQILNQKGNLKEEEMKEEFVSLGLKSMRNLGLEFSNVKKAAAIESNEFVHACSVLESKQAEMIRILSGCGEEMRSGQFMREMERFLEGSV EEMKLVREEQRRVMEVVKKTTSYYQAGRSRGSSGAEEQQPLELFVIVKDFLEMVDRVCTDISRSCSLRKKKKGGTTSGFSPAIGSTSSSSGKVQQRAPRS YQFPSAAMAVDESDEDDDDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70140		ATFH8	formin 8 (.1)		Lus10004244 [exp]	0	1
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	15.7	0.6677
					Lus10025864 [exp]	22.1	0.6174
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	30.9	0.6277
AT1G05070			Protein of unknown function (D...		Lus10035288 [exp]	35.5	0.6344
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021046 [exp]	37.3	0.5882
AT1G70140		ATFH8	formin 8 (.1)		Lus10029212 [exp]	37.6	0.6208
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	64.0	0.5907
AT3G18360			VQ motif-containing protein (....		Lus10009033 [exp]	66.5	0.5839
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	69.6	0.5874
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	73.1	0.5973

Compare expression of checked genes

Lus10004244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.