Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62910 192 / 2e-58 RING/U-box superfamily protein (.1) AT3G48070 149 / 6e-42 RING/U-box superfamily protein (.1.2) AT1G74870 78 / 4e-16 RING/U-box superfamily protein (.1) AT3G45630 62 / 2e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G60170 61 / 7e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT2G28540 59 / 3e-09 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042156 [exp] 572 / 0 AT5G62910 218 / 1e-68 RING/U-box superfamily protein (.1) Lus10018126 [exp] 62 / 3e-10 AT3G45630 774 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10036140 [exp] 61 / 5e-10 AT5G60170 491 / 7e-158 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036138 [exp] 61 / 6e-10 AT5G60170 745 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018125 [exp] 61 / 8e-10 AT3G45630 504 / 1e-163 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069400 [exp] 271 / 3e-89 AT3G48070 199 / 2e-61 RING/U-box superfamily protein (.1.2) Potri.012G074500 [exp] 248 / 5e-80 AT3G48070 204 / 3e-63 RING/U-box superfamily protein (.1.2) Potri.016G084700 [exp] 63 / 1e-10 AT2G28540 446 / 1e-141 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G132300 [exp] 62 / 2e-10 AT3G45630 437 / 8e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G026200 [exp] 60 / 1e-09 AT3G45630 812 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G208800 [exp] 42 / 0.0007 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004246 pacid=23177800 polypeptide=Lus10004246 locus=Lus10004246.g ID=Lus10004246.BGIv1.0 annot-version=v1.0 ATGGTTTCCGATTCAATCAACCTCAACGCCTCCGTTGCCCCGAGGGATTTCGCCAAGAAGAAGAGGGCCAATAGGTCTGCAAGATTGAAGCAGTGCAAAC TCGATGCGCGTCGTGAGCAATGGCTCTCTCAAGGCACGGGAAAGAGTAAGGAGCAAAAGATGCCTTCGCGTGCATCTCCCTCTCCTCTTTCTCCTTGCAA GAGCAAGGAAAGGAAGAATCTTTTGGAGAAATTGGCGGTGGATGATGACGAGAATGAAAATGGGACGACTCCTCTCCATCATCATCACCACGACTTCGAT ACAGATTCGCCTTCTAACAGCCCCATCAGCAACAGCAGTAGTGTACTCGGGGCTACTACTGATTCGGGCACGAACTCCACTGCTTCTTCGAGTTGCAGTG GGAATAGTGCCGGTTCTTGCTCCGGCAATATAACCGAGGAAGAGGATGAGGAGGACGATGATGTCGAAGATGAGAATTGCTTGGATGATTGGGAGACTAT GGCGGATGCTTTAGCTGCAAATGTGGATGATGCCAAAGAAGAGGGCGGAGCAAACGACGATTCACATTGCGAGCATGAACCTCGAATCCAAGTGCATGAT AGGTGTACTAGTTTAGGCTCCTCCGTTAACCTGAGGCCAGAATTCCAGCTAGGCGTTCCACCTAGAGCAACTTCGTGCAATGCTCGGGCATGGAGGCCGG ATGATGCATTTCGTCCACAGAGTCTACCGACTTTGTCGAAGCAGAGGAGCTTTCCGGATCCAAGCAGACCATATTCCCAGGGTGGTGCCCTACCGTGGTC GTCTAAATCTCACAACATGCCGTCCAGCTGTCCTATATGCTGTGAAGATTTGGATCCAACAGACTCCAGCTTCTCGCCATGCACTTGTGGGTTTCGTCTT TGTCTCTTCTGTCACAAGAGGATTCTCGAAGAAGATGGGCGCTGTCCTAGCTGTAGAAAGCCTTACCAGCTCAGCAAAGTAGAGGCCGAGCCAAGCATCC TTGGGGGAAGCCTTACAGTGAGGTTGGCTCGCTCTTGCAGCATGAGGTCCTAA
AA sequence Show only first row Show all	>Lus10004246 pacid=23177800 polypeptide=Lus10004246 locus=Lus10004246.g ID=Lus10004246.BGIv1.0 annot-version=v1.0 MVSDSINLNASVAPRDFAKKKRANRSARLKQCKLDARREQWLSQGTGKSKEQKMPSRASPSPLSPCKSKERKNLLEKLAVDDDENENGTTPLHHHHHDFD TDSPSNSPISNSSSVLGATTDSGTNSTASSSCSGNSAGSCSGNITEEEDEEDDDVEDENCLDDWETMADALAANVDDAKEEGGANDDSHCEHEPRIQVHD RCTSLGSSVNLRPEFQLGVPPRATSCNARAWRPDDAFRPQSLPTLSKQRSFPDPSRPYSQGGALPWSSKSHNMPSSCPICCEDLDPTDSSFSPCTCGFRL CLFCHKRILEEDGRCPSCRKPYQLSKVEAEPSILGGSLTVRLARSCSMRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62910			RING/U-box superfamily protein...		Lus10004246 [exp]	0	1
AT5G62910			RING/U-box superfamily protein...		Lus10042156 [exp]	1.0	0.8913
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	2.0	0.8583
AT4G24200			Transcription elongation facto...		Lus10033586 [exp]	6.0	0.7803
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10042119 [exp]	6.6	0.7675
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	9.0	0.8167
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	10.4	0.8055
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	12.7	0.7883
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	15.5	0.7888
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	16.1	0.7743
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	18.0	0.7557

Compare expression of checked genes

Lus10004246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.