Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61820 411 / 5e-141 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042158 [exp] 698 / 0 AT5G61820 415 / 1e-142 unknown protein Lus10003210 [exp] 478 / 1e-167 AT5G61820 431 / 1e-148 unknown protein Lus10017316 [exp] 475 / 1e-166 AT5G61820 436 / 1e-150 unknown protein Lus10033851 [exp] 333 / 3e-110 AT5G61820 316 / 6e-103 unknown protein Lus10015933 [exp] 320 / 1e-105 AT5G61820 306 / 7e-100 unknown protein Lus10017315 [exp] 141 / 1e-40 AT5G61820 130 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108600 [exp] 517 / 0 AT5G61820 477 / 3e-166 unknown protein Potri.015G108500 [exp] 487 / 6e-171 AT5G61820 470 / 2e-163 unknown protein Potri.015G108800 [exp] 457 / 5e-159 AT5G61820 468 / 7e-163 unknown protein Potri.015G108700 [exp] 454 / 5e-158 AT5G61820 453 / 5e-157 unknown protein Potri.012G110300 [exp] 377 / 1e-129 AT5G61820 366 / 9e-125 unknown protein Potri.012G110600 [exp] 158 / 6e-46 AT5G61820 153 / 4e-44 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07712 [flax] [poplar] SURNod19 Stress up-regulated Nod 19
Representative CDS sequence Show only first row Show all	>Lus10004249 pacid=23177812 polypeptide=Lus10004249 locus=Lus10004249.g ID=Lus10004249.BGIv1.0 annot-version=v1.0 ATGAAGTCGGCCACTTTTCTGTCACCCAAGTTTGTGCTTGGACCAGGATCAGTGCAGAACAATTTCTTTTACAACGTCGATTTCCCTCGAGGCCACATTG GGATCAAGAGCTTTGATGCTGAAGTTGTAGATTCGAGTGGTAATTCTATCCCTCTCCATGAGACATATCTTCATCACTGGCTTGTCCAGAGATACCATGT CCCTAAGGACAAGGCCAGAGACCCTAATCTTAGTCGTAAGGATGTTATATCTGTAATGAATAACGGAATCTGTCAGAATGGAGTTCTTGACCAGTCGAAT GGTCTTGGCTCGGAAACTCGAAGGATGTCTACATATGTTCCGGATCCTTACGCAATTGAAGTTGGCAATCCATTTGAAATTCCGGATGGGTATGAGGAAG GATGGTTGCTTAATATTCATGCGATTGATACACGTGGTGCTGAAGATCGGTTGGGATGCACTGAGTGTCTATGTGAAGTATATAATACTTCAAGGATTGC TCCTTATTTGCCGAATAATTATAGAGGTGGTTTGTTTTGTTGCTTTGGGCGTACAGAATGCAAGCTCAAACAAGGGTTTGAGGCTCCAAGGAGAATCCTT TATCTTCGATACACGGTTAAGTGGGTTGATTGGGACAGTGGGGTTCTCCCAGTTAAGATATATATATTCGATGTCACTGATACCGGGAAAAGGAACAATG GTTCTACCGGACTCAGTCCAGAAAATGGTTGCCAGATTGAGTATGACATAGAGCCATGCAGGGCTCCTGGGACGTGTGTCGATGTGAAAAAGGCAAACTT TAGGATGCCATCTGGTGGTTATATTATCTACAGCGTTGCCCATCAACACACTGGAGGGGTCGGTTCAACTCTTTATGGAAAGGACGGACGTGTTGTATGC CATTCAGAACCAATTTATGGAAATGGGAATGAGGCAGGGAATGAAGCTGGTTATATTGTAGGCATGTCAACATGTTACCCAAAGATTGGATCTTTAAAGG TAGCAGCTGGAGAAGAACTGGTACTGGAATCCAAGTACAATTCTTCCAGCCAGAGAGGCCATACAGGAGTAATGGGACTTTTCTATCTTATGGTTGCAGA CAACACTCCATCAACCTTGCCCATTTTGCGCGCTCCTCTTCTTACCATATGTGGTGATTTCAGCTTGAATGCATGGACAACTGTAGTAGCTCCCTTAGGA TTGGCAGCCGCAGTTGGTGTTGGAGTCTTATCTTGGATGAGGAATCGACGCACTGAAAATAGCTACACCCTGATATGA
AA sequence Show only first row Show all	>Lus10004249 pacid=23177812 polypeptide=Lus10004249 locus=Lus10004249.g ID=Lus10004249.BGIv1.0 annot-version=v1.0 MKSATFLSPKFVLGPGSVQNNFFYNVDFPRGHIGIKSFDAEVVDSSGNSIPLHETYLHHWLVQRYHVPKDKARDPNLSRKDVISVMNNGICQNGVLDQSN GLGSETRRMSTYVPDPYAIEVGNPFEIPDGYEEGWLLNIHAIDTRGAEDRLGCTECLCEVYNTSRIAPYLPNNYRGGLFCCFGRTECKLKQGFEAPRRIL YLRYTVKWVDWDSGVLPVKIYIFDVTDTGKRNNGSTGLSPENGCQIEYDIEPCRAPGTCVDVKKANFRMPSGGYIIYSVAHQHTGGVGSTLYGKDGRVVC HSEPIYGNGNEAGNEAGYIVGMSTCYPKIGSLKVAAGEELVLESKYNSSSQRGHTGVMGLFYLMVADNTPSTLPILRAPLLTICGDFSLNAWTTVVAPLG LAAAVGVGVLSWMRNRRTENSYTLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61820			unknown protein		Lus10004249 [exp]	0	1
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	3.0	0.9402
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	4.2	0.9299
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10029351 [exp]	8.1	0.8798
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	9.2	0.9323
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	10.2	0.9256
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	11.4	0.9031
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10042288 [exp]	11.6	0.8591
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10015874 [exp]	12.8	0.9144
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	14.3	0.9254
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013725 [exp]	14.7	0.9221

Compare expression of checked genes

Lus10004249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.