Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62600 1276 / 0 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) AT1G12930 63 / 8e-10 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042159 [exp] 1602 / 0 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10012590 [exp] 124 / 1e-28 AT1G12930 1148 / 0.0 ARM repeat superfamily protein (.1) Lus10041503 [exp] 120 / 2e-27 AT1G12930 558 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073600 [exp] 1455 / 0 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.015G068600 [exp] 1451 / 0 AT5G62600 1454 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.014G141100 [exp] 120 / 2e-27 AT1G12930 1258 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10004250 pacid=23177827 polypeptide=Lus10004250 locus=Lus10004250.g ID=Lus10004250.BGIv1.0 annot-version=v1.0 ATGGAGCTTCAGAACACAGTCAAAGAAGCCCTAAATGCACTGTATCATCACCCTGACGACGCTGTTCGCATGGAAGCCGATCGCTGGCTTCAGAGTTTTC AGCGCACTCTCGATGCTTGGCAGGTTGCTGACAATTTGCTTCATGATGCTGCGAGCAATCTGGAAACACTTATTTTTTGTTCTCAAACCCTCAGGAGCAA GGTGCAACGAGATTTTGAAGAGCTACCTTCTGAAGCCTTTCGGCCTTTGCAGACTTCATTGAATACATTGGTTAAAAAATTTCATCGAGGGCCTCCAAAA GTCAGGACTCAGATCAGTATCGCTGTTGCGGCCTTGGCTGTACAAGTTCCAGCAGAGGATTGGGGAGATGGTGGTATTGTGAATTGGCTCAGGGACGAGA TGAATACCCACCCAGAGTATTTACCAGGTTTCCTGGAGTTGCTCACAGTTTTACCTGAGGAAACCTTCAATCACAAAATTGCAGCTCGTCCGGAAAGAAG ACGTCAGTTTGAAAAAGAGCTTACTTCACAAATGGAAGTTGCTCTTAGTATCTTGACAACTTGTTTGAAAATAAACGAACTGAAGGAACAGGTTCTTGAG GCTTTTGCTTCTTGGTTGCGCCTAAGGCATGGGTATGCATCTCTTTCCAATTCTGGCCTTGGCTGTTTCTGTGCCGTAGAGGTGGATGATGTTGTCGAAT ATGGAGTATTTTGGCATGGCATTATCTACTTTAAATCTTCTGTTGATTTCAGAATTCCAGGATCCGTGCTTGCAACTCATCCACTGGTCCATACTGCTCT TTCAAGCTTGAATTCTGAGTTTCTGTCCGAGGCAGCCGTAAATGTGGTTTCGGAGTTGATACACTATACAACTGCGAGACATTCTGGTGGTATTCCTGTA CAGATGCCTTTGATTCAAGTGATTGTGCCTCAAGTAATGAGTTTAAAGGGGCAACTTAGAGATTCATCGAAGGATGAAGAAGATGTGAAGGCCGTTGCTC GATTATTTGCGGACTTGGGTGATTCATATGTTGAGCTTATTGCTACTGGTGCGGATGACCCGATGGTGATAGTCCATGCACTGTTGGAAGTTGCTTCGCA TCCAGAGTATGACATTGCCTCAATGACCTTCAATTTTTGGCATAATCTTCAAGTACTCTTGACCAAGAGGGATTCCTATGTTTCTCACGGCAATGAGTCA TCTGCTGAAGCTGAAAGAACTAGGAGACTGCAGATTTTTCGGCCAGCTTATGAGTCGCTTGTATCCCTGGTGTTACAACTCCAATGTAACAAGTCAAGCA TTGCGTTGACAAGCCCTGACCCTATCTATAACACTTACAAAAAAGCTTTGGTCTTTGTAGCTGTTGCGGATGTGTTAATCGATGCAGCCTCAGTTCTAGG GGGTGATGCCATTCTGAGAATTCTCTATTTAAAGCTAGCTGAGGCACAAGCTTGCTGGGGTAATGGACAGAGCGAGTGGCGTCCAGCAGAAGCTGCTTTA TTTTGTGTCAGGGCAATATCAACATATGTTTCAAAAGATGAGGCTGAAGTGATGCCTAAGATTATGTCTGTACTTTTGGAACTTCCGGATCAGCCACAGC TACTGCAGACAGTTTGCTTGACTATTGGAGCATACTCGAAGTGGCTCGATACTGCATCAGATGGATTGGCTGTGTTGTCTTCTGTAATAAAGGTTCTACT ATGTGGCATGGGTACATCTGAAGATTCAGCTGCTGCTGCAGCTGTGGCATTCCGACACATTTGTGATGATTGTCGGAGAAAGCTTTCTGGAAATTTTGAT GATCTCTTCTCCATATACCACCGGGCGGTTAGTGGGGAGGGTGCCTTTAAAGTCACTGTTGATGACTCTCTGCATTTAGTTGAGGCCTTAAGTATGGTCA TTACAGAACTACCTCCAGACCAAGCCAAACAAGCATTAGAAAAACTATGCTTTCCAGTGGTTGCTCCTTTACAGGAAATCATCAGTCAAGGTCCAGAACT ATTTGAGAAGAAACATGCTCGTGAATTGACTGTCCATATTGATCGACTTGCATATATCTTCAGGTATGTAAATCACCCTGAAGCTGTGGCGGATGCAATA CAAAGACTTTGGCCTCTACTGAAAGCAATTTTTGACCTTCGTGCTTGGGAAATGAGGACAATGGAGTCTTTGTGCCGAGCCTGTAAATATGCGATATTTG GGTCCGATCCATCCTGTGCTTCCTACCTGAAAAACTTGATTGAAGCACTCTTTACGCACACAGTGTGCCTTCTTACTAATATCGAGGATTTTACTCTTCG GCCAGATATAGCTGATGATTGCTTTCTACTAGCATCGAGATGCATGCGTTACTGTCCTCAGTTATTCATTCCATCTCAAGTATTCCCTTCATTAGTTGAT TGTGCCATGATCGGTGTCACGGTACAGCACAGAGAGGCCTCCAACTCGATATTGACATTCCTGTCCGACATCTTCGATCTTGGGAAATCAAGCCTCGGAG AACAGTTCCTATCAATCAGGAACAACATTGTTGCTCCACGAGGTCCTACCATAACCAGAAGATTGATCGCTTCGTTAACTGGGGCATTACCAAGTTCGCG CATAGAAACGGTAACCTATGCTTTACTGTCGCTAGCTCGTTCATTCGGGGCGACCGCGGTGGGTTGGGGGAGGGATATTGTTTCCTTAATCCCGGCAACC GCGGTGATGGATGTCGAACGCACGAGATTCTTGAAAGCTATGTCGGATGCTGCTTCAGGAGTGGATATCAACACATTGATGGCACCAATAGAAGAGCTGT CGGATCTCTGCCGACGAAACCGGATGGTTCAGGAGATTGTACAAGGAGCTCTAAGGCCACTGGAGTTGAAATAA
AA sequence Show only first row Show all	>Lus10004250 pacid=23177827 polypeptide=Lus10004250 locus=Lus10004250.g ID=Lus10004250.BGIv1.0 annot-version=v1.0 MELQNTVKEALNALYHHPDDAVRMEADRWLQSFQRTLDAWQVADNLLHDAASNLETLIFCSQTLRSKVQRDFEELPSEAFRPLQTSLNTLVKKFHRGPPK VRTQISIAVAALAVQVPAEDWGDGGIVNWLRDEMNTHPEYLPGFLELLTVLPEETFNHKIAARPERRRQFEKELTSQMEVALSILTTCLKINELKEQVLE AFASWLRLRHGYASLSNSGLGCFCAVEVDDVVEYGVFWHGIIYFKSSVDFRIPGSVLATHPLVHTALSSLNSEFLSEAAVNVVSELIHYTTARHSGGIPV QMPLIQVIVPQVMSLKGQLRDSSKDEEDVKAVARLFADLGDSYVELIATGADDPMVIVHALLEVASHPEYDIASMTFNFWHNLQVLLTKRDSYVSHGNES SAEAERTRRLQIFRPAYESLVSLVLQLQCNKSSIALTSPDPIYNTYKKALVFVAVADVLIDAASVLGGDAILRILYLKLAEAQACWGNGQSEWRPAEAAL FCVRAISTYVSKDEAEVMPKIMSVLLELPDQPQLLQTVCLTIGAYSKWLDTASDGLAVLSSVIKVLLCGMGTSEDSAAAAAVAFRHICDDCRRKLSGNFD DLFSIYHRAVSGEGAFKVTVDDSLHLVEALSMVITELPPDQAKQALEKLCFPVVAPLQEIISQGPELFEKKHARELTVHIDRLAYIFRYVNHPEAVADAI QRLWPLLKAIFDLRAWEMRTMESLCRACKYAIFGSDPSCASYLKNLIEALFTHTVCLLTNIEDFTLRPDIADDCFLLASRCMRYCPQLFIPSQVFPSLVD CAMIGVTVQHREASNSILTFLSDIFDLGKSSLGEQFLSIRNNIVAPRGPTITRRLIASLTGALPSSRIETVTYALLSLARSFGATAVGWGRDIVSLIPAT AVMDVERTRFLKAMSDAASGVDINTLMAPIEELSDLCRRNRMVQEIVQGALRPLELK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	0	1
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	1.7	0.9162
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	2.0	0.8937
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	3.2	0.9048
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10016513 [exp]	4.0	0.8626
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	5.3	0.8672
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	5.5	0.8912
AT5G13560			unknown protein		Lus10023462 [exp]	5.7	0.8419
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	8.4	0.8837
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	10.2	0.8946
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	11.0	0.8430

Compare expression of checked genes

Lus10004250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.