Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25650 182 / 3e-56 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT3G44880 95 / 9e-24 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT2G24820 65 / 3e-13 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT1G44446 52 / 1e-08 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042159 [exp] 231 / 4e-71 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10033784 [exp] 203 / 5e-62 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10025415 [exp] 187 / 5e-58 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 186 / 1e-57 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 186 / 2e-57 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025412 [exp] 184 / 2e-56 AT4G25650 574 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015284 [exp] 178 / 2e-54 AT4G25650 537 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10025414 [exp] 175 / 4e-53 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015287 [exp] 174 / 6e-53 AT4G25650 568 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G219000 [exp] 194 / 8e-61 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 187 / 5e-58 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 186 / 1e-57 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005900 [exp] 182 / 5e-56 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 180 / 2e-55 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G218900 [exp] 177 / 4e-54 AT4G25650 639 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G217200 [exp] 96 / 5e-24 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.009G004100 [exp] 81 / 7e-19 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.018G015700 [exp] 71 / 3e-15 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.006G267300 [exp] 71 / 4e-15 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10004251 pacid=23177832 polypeptide=Lus10004251 locus=Lus10004251.g ID=Lus10004251.BGIv1.0 annot-version=v1.0 ATGTGCCCTCATAGATTGGCTCCACTCTCTCAAGGAAGGGTTGATCAGTGGGGGAGGTTGCAATGTGACTATCACGGTTGGTGCTTCGATGGCTCCGTCG AATGTAAGCTCATCCCTCAGGCTCCTCTCGATGGCCCTCCAGTACACACATCGAAGAGAGCCTGTGTAGCAGCATATCCAACTACCGTGAAGCACGACAT TCTGTGGTTTTGGCCAAACAGTGATCCCAGTTTTAGAGATATCCTATCTGTGAAAAAGCCTCCATACATTGCAGAGCTAGATGACCCTTCATACACTAAA CCAATGCTGATCAGAGAGTTCCCTTACGGGTATGTAAGAGAAAACGGTCTCTGCTCATTTCTGACTGTGACTCTTTGCTTAGAGCTCTAA
AA sequence Show only first row Show all	>Lus10004251 pacid=23177832 polypeptide=Lus10004251 locus=Lus10004251.g ID=Lus10004251.BGIv1.0 annot-version=v1.0 MCPHRLAPLSQGRVDQWGRLQCDYHGWCFDGSVECKLIPQAPLDGPPVHTSKRACVAAYPTTVKHDILWFWPNSDPSFRDILSVKKPPYIAELDDPSYTK PMLIREFPYGYVRENGLCSFLTVTLCLEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10004251 [exp]	0	1
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	3.3	0.8640
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	3.7	0.8522
					Lus10010603 [exp]	4.2	0.8475
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	9.2	0.8054
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	11.0	0.8312
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	11.6	0.8274
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	12.0	0.7787
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10033523 [exp]	12.5	0.7421
AT5G20950			Glycosyl hydrolase family prot...		Lus10023604 [exp]	12.6	0.7565
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	13.2	0.7932

Compare expression of checked genes

Lus10004251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.