Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69960 546 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT1G10430 544 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 541 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT2G42500 491 / 1e-170 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 490 / 3e-170 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT5G55260 394 / 8e-133 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT4G26720 393 / 2e-132 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT3G19980 348 / 5e-115 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 345 / 7e-114 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 276 / 6e-87 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042160 [exp] 565 / 0 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 564 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 555 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 550 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 550 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10025174 [exp] 494 / 9e-172 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10039185 [exp] 492 / 8e-171 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 490 / 2e-170 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 488 / 5e-169 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073300 [exp] 559 / 0 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.015G068300 [exp] 556 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 543 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 540 / 0 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.001G007800 [exp] 492 / 4e-171 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.003G217900 [exp] 492 / 4e-171 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 488 / 1e-169 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 487 / 4e-169 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.011G092200 [exp] 388 / 2e-130 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 385 / 2e-129 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01221 [flax] [poplar] Dynein_light Dynein light chain type 1 PF00253 [flax] [poplar] Ribosomal_S14 Ribosomal protein S14p/S29e CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10004252 pacid=23177824 polypeptide=Lus10004252 locus=Lus10004252.g ID=Lus10004252.BGIv1.0 annot-version=v1.0 ATGGCTACCAACAATAGGCGTATGTTAGCAGCAGCATCCCAGCCAGACCCCAAACTCAAACCCAACCACCACCAATCATCTTCAGCCATGGATCCCACTT CCCACCTCCAATCATCCAAAGATCCTCCTCCTCCTCCTAGACCCAGCTCCTCTTTCATGTCTAATTACTTGTCTTCCAGACTCCTAAAGCCGCCTTCCTC CATTACCCCACTTACACATGACTCACCAGTACACTTGCAGCAAGCCAAATCCATGACTGTGTCTGCTGATTTCGACTCTTCTTCTAGGTTTGCCGCTGCT AGAGCTAAGTATTACACACAGCAGCAGAAGCTAGCAGCTGCAAGTGATGATGCCAAGTTGGAGAAGGAGAGTCTGAAAAGGGTTGTTGGAATTGGAAAGG AGGAAGCTTTTTACAAAGGGACATTGAAAAAGTCTCCTTCTTTGGATTTGGAGGAGGAGAAAGTTCTGGTCTTGAATGAGACTAAGAAGACCCACAGGAA GAAGAATGCCAAGAACAAACACGATTCTGATGCTGAGGAAATGAAGGTGAAGAAGAAAGAGGATATCTTGTTACTTGAAGGGCTTGACATCAAAAGGATT TCATTATCTGGTGGTGCTGGTGATGGGAGAAGAAGATCCTTGACTGGCTCTTCACAAGTGGAGTTGGTTGATTTCCTAGCCAGCAATGGTGCTAAAATTG TCTCGGTTGATATGCCTCCATTTATGCAGATCCATGCTATCGATTGTGCCAGGAAGACTTGTGATAGTCTAGAGAAGTTTGCTGCCAAGACCCTTGCACT CACTCTGAAGAAGGAGTTTGATGGAGTGTATGGACCGGCATGGCACTGCATAGTAGGGACGAGTTTTGGGTCATTTGTGACACATTCAGTTGGTGGGTTC CTCTATTTCTCAATGGATTCAAAGTTTATGGGCTCGAAGATGGATCCTCATGTAATACCGACAGAAAGTGTCTTTTGGGCTTTAATAAGCCCAGACCATC TGGACCCAAACCCTCGAAGTATATATACCCAGAAAACTCCAGCTTCACCCCTTCCATCGCACAAGTGCACTAGGGTTTTCAGTTTTGAGAAATCAGCAAC AGAAGCAGCAGCGCAGCAGCAGCTTTCTACTGCGATCAGAAATCAGCCAGCCATGGGTCACCAAAACGTCTGGAACTCTCATCCCAAGACCTACGGTCCT GGTTCCCGTGCTTGCCGTGTGTGTGGTAACCCCCACGCCATCATCAGGAAGTATGGTCTAATGTGCTGCAGGCAGTGCTTCCGCAGCAATGCCAAGGAAA TCGGTTTCATCAAGGGGCGCACGGTGCAGCTGGTCAAGTGCCCGGTGACGGTCTGCGGGGATATCCATGGCCAGTTCCACGATCTAGTCGAACTCTTTCG AATAGGCGGAAACCCTCCTGACACGAACTACCTCTTCATGGGCGACTATGTAGATCGAGGGTATTATTCGGTGGAAACGGTCACCCTTCTAGTCGCCTTG AAAGTAAGATATAGAGATAGGATCACAATTCTGAGAGGAAATCATGAAAGCCGTCAAATAACTCAAGTGTATGGATTCTATGATGAGTGCTTGAGAAAAT ATGGAAATGCCAATGTGTGGAAACATTTTACTGATCTCTTTGATTATCTACCACTTACAGCTCTGATTGAGAGTCAGGTCTTCTGCTTACATGGTGGACT TTCCCCTTCACTAGACACGCTAGAAAACATTCGCTCCCTTGATCGTATCCAAGAGGTTCCACACGAGGGTCCTATGTGTGACCTCCTATGGTCGGACCCA GATGACCGTTGCGGGTGGGGGATCTCTCCTCGTGGAGCTGGCTACACCTTTGGGCAGGACATATCTCAACAGTTCAACCACACGAATGGCCTTTCTCTCA TATCCAGAGCTCACCAGCTGGTCATGGAAGGTTACAATTGGGCTCAGGACAAGAACGTAGTTACAGTCTTCAGCGCCCCGAACTACTGCTACCGGTGTGG GAACATGGCAGCCATTCTCGAGATCGGAGAGAACATGGAGCAGAACTTCCTGCAGTTCGACCCAGCTCCTCGCCAGATTGAACCTGAGACGACTCGCAGA ACACCCGATTATTTTTTGTGA
AA sequence Show only first row Show all	>Lus10004252 pacid=23177824 polypeptide=Lus10004252 locus=Lus10004252.g ID=Lus10004252.BGIv1.0 annot-version=v1.0 MATNNRRMLAAASQPDPKLKPNHHQSSSAMDPTSHLQSSKDPPPPPRPSSSFMSNYLSSRLLKPPSSITPLTHDSPVHLQQAKSMTVSADFDSSSRFAAA RAKYYTQQQKLAAASDDAKLEKESLKRVVGIGKEEAFYKGTLKKSPSLDLEEEKVLVLNETKKTHRKKNAKNKHDSDAEEMKVKKKEDILLLEGLDIKRI SLSGGAGDGRRRSLTGSSQVELVDFLASNGAKIVSVDMPPFMQIHAIDCARKTCDSLEKFAAKTLALTLKKEFDGVYGPAWHCIVGTSFGSFVTHSVGGF LYFSMDSKFMGSKMDPHVIPTESVFWALISPDHLDPNPRSIYTQKTPASPLPSHKCTRVFSFEKSATEAAAQQQLSTAIRNQPAMGHQNVWNSHPKTYGP GSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFIKGRTVQLVKCPVTVCGDIHGQFHDLVELFRIGGNPPDTNYLFMGDYVDRGYYSVETVTLLVAL KVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLENIRSLDRIQEVPHEGPMCDLLWSDP DDRCGWGISPRGAGYTFGQDISQQFNHTNGLSLISRAHQLVMEGYNWAQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPETTRR TPDYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69960		PP2A	serine/threonine protein phosp...		Lus10004252 [exp]	0	1
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	1.7	0.8843
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10033907 [exp]	2.4	0.8643
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	3.5	0.8713
AT3G09860			unknown protein		Lus10001400 [exp]	8.1	0.8462
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	9.2	0.8632
AT3G18430			Calcium-binding EF-hand family...		Lus10010775 [exp]	9.8	0.8323
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	10.6	0.8114
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	11.5	0.8175
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	12.1	0.8314
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10040106 [exp]	17.9	0.7966

Compare expression of checked genes

Lus10004252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.