Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49170 811 / 0 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 431 / 2e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 422 / 1e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 418 / 3e-132 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 412 / 3e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 412 / 2e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G16860 404 / 2e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 392 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 392 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 397 / 2e-124 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042161 [exp] 798 / 0 AT3G49170 484 / 1e-163 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 456 / 7e-146 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 451 / 5e-144 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 438 / 7e-138 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 428 / 4e-136 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 429 / 1e-135 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 429 / 1e-135 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 421 / 3e-134 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 420 / 3e-134 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018700 [exp] 1006 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 493 / 3e-160 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 451 / 8e-143 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 446 / 2e-142 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 442 / 1e-141 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 442 / 1e-141 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 437 / 5e-138 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 427 / 7e-138 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 431 / 5e-135 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 422 / 3e-132 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004253 pacid=23177817 polypeptide=Lus10004253 locus=Lus10004253.g ID=Lus10004253.BGIv1.0 annot-version=v1.0 ATGAGAGGAGAGTTAGACGATGAAGAAGAGGAATTGCAGAAGGGGCTTGAGGCAGAGAAAGATGCCACCACCAAAGCAGTTGAAGAAAATGTCGCTGAAG AGGTTCTTTCTCTCTGTTTAGTTGCGATGAGAGATGGCCGTTTCCTTCATTTCGGCCTCCCGTTGCAACGTTTCATCAAGGAGGATCGTCGTCCGGTTAA TTCATGCAAAACAGAGAAGATGATAAGCCTCTCTGCTGTATCTCCTCAGGCTAACCTCCTCTCGCCTTCTCCTTCTCCAACCAGACCTTCATCCACCACC ATCTCCGGCCAAAAGCTTCCCAATTCATCACTATCCTTCAAAACCGATGCCAATCTCCAATATCTCCATCTCAAGGACCGTCTCACCAGCTATCTCGATG CCGGCCAACTCCCGAAAGCTGTTTCCATTCTCAACACCATGGCCCAAAACGGCACATATCCAGACCTACTTACGTATTCCCTTCTCCTCAGATCCTGCAT CCGCTCGCAAAGCTTCCAACTCGGCCAAACCGTACACGACAGCTTGGCCCGGTCAGGTATCCAACCGAACTCGTTTATCCTGAACTCGCTCATCAGTCTT TACTCGAAATGCGGCGATTGGGAGACAGCGGAATCTATATTCGAGGATATGGGATTGGTGAAGAGAGATGTGGTTTCCTGGAGTGCGATGATTTCCTGCT ACGCGAATAACGAGATGGAATTGGAAGCCATTAGTGTGTTTGTTCATATGCTCGAGTCTGGGGTTTATCCCAACGAGTACTGTTACTCGGCGGTAATTCG GGCTTGTTCGAAGGTGGAGACGATTAGGATCGGCGAGGCTGTTTTCGGATCCGTGCTAAAAACAGGGCATTTGGCGGCTGATGTTTGCGTAGGATGTGGT TTGATTGACATGTTTGTAAAGGGAGGTAAGAATTTGGATGATGCATATAAAGTGTTCGATAAAATGCCTGAAAGAAATGTGATTACATGGACGCTGATGA TAACCAGGTTTCACCAACTCGGATTCGGTAGAGATGCTATTAATGTGTTTGTAGACATGGTTTCGTCCGGAATTGTGCCCGATAGGTTTACTCACAGTGC AGTGATTTCAGCTTGTACGGAATTAGGATCGTTGTCAGCTGGACGGCAGTTCCATACTTGGATTATAAAGTCGGGGAATGCCCGGGACGTTTGCATCGGA TGCAGCTTGGTCGATATGTACGCGAAATGCAATCTCGAAGGATCTCTGGCCGAATCTAGGAAGGTGTTTTCCAGGATGCAAGATCATAATGTAATATCTT GGACTACTATTATAACAGGTTATGTGCAGAAAAATGGAGGATTGCATGATATGGAAGCAATTGAACTCTTCCTCGAGATGATACAGGAAGGAAATGTTAA GCCGAATGAGTTCACTTTAGCTGCCGTGATTAAGGCTTGCACAGGTCTTTCGAATTCACGAATCGGAGAATCGTTACATGGCTATGCAGTGAAGGTTGGT CTCGAATCTGTCAACTGTGTTGGGAACTCTGTTATCAGCATGTATGCTAAATTTGGCCACATGGAGGATTCGAGGAAAGCATTCGACGTTTTGTTTGACA AGAATTTGAATTCGGAGGATGCAGGAACCAAAATCGATGCTTTCACGTTTGCAAGCTTGTTAAGTGGTTCTTCGAGCATTGGTGCAATCAATAAAGGCGA GCAGATCCACGCCCAGATCCTGAAATCGAGATTCGAACCGAGCTTTCACGTCTCAAACGCTTTGATCTCCATGTACTCCACTTGCGGAAACATAGAAGCT GCTTACCAAGTCTTCCAGGACATGGAGACGGAAGGACGAAATGTCATATCTTGGACTTCGATGGTAACCGGATTCGCGAAACACGGATTCTCTACAAGAG CATTGGAGACATTTCACAACATGCTAGAGGCAGGAGTGAAGCCGAACGACGTGACCTATATAGCGGTTTTATCAGCTTGTAGCCACGCCGGTTTGGTCTC CGAAGGGTGGGAATATTTCGAATCGATGAGGAGGGAACACGGTATCGTGCCGAGAATGGAGCATTACTCATGTATGGTCGATTTGTTAGGTCGAGCAGGA CGATTAACCGAAGCAATGGATTTCATGAACGCAATGCCATTCGAAACGAACCCTTTGGTCCTCCGAACATTCCTCGGAGCTTGCCTTGTACACGGAGACA CAAAACTCGGCAAGCATGCTGCAGAGATGATGCTCGATCAAGATCCTGACGATCCAACGGCTTACGTGCTTTTATCGAACTTATATGCCTCAGCCGGGAA ATGGGAAGAGGTTACTGAAATCAGGAAAGAGATGAAACTGAGGAATTTGGCGAAGGAAGCTGGATGCAGCTGGATTGAAACAGGTAACGTGGTGCACAAG TTTCACGTTGGAGACAGTACACACAGGAGGGCTTTCGAAATTTTCGACGAGCTGAAACAGTTGGGTGAAGAGATTAAGGAACTGGGGTATGTTCCGAAGA CGGAATTTGTGCTCCATGATGTTGGGGAAGAAGAGAAGGAGATGTATTTGTCCATTACATTTAATTTAGTGCTGTTGACGGGACACGTTTCTTGCGATCA ATTCAGCTTTCGAACTCGAAAAAGTTTGTTCGTGATTTGGCTCAACTTTTTAATGGGTCAATTTCTGAGCTAA
AA sequence Show only first row Show all	>Lus10004253 pacid=23177817 polypeptide=Lus10004253 locus=Lus10004253.g ID=Lus10004253.BGIv1.0 annot-version=v1.0 MRGELDDEEEELQKGLEAEKDATTKAVEENVAEEVLSLCLVAMRDGRFLHFGLPLQRFIKEDRRPVNSCKTEKMISLSAVSPQANLLSPSPSPTRPSSTT ISGQKLPNSSLSFKTDANLQYLHLKDRLTSYLDAGQLPKAVSILNTMAQNGTYPDLLTYSLLLRSCIRSQSFQLGQTVHDSLARSGIQPNSFILNSLISL YSKCGDWETAESIFEDMGLVKRDVVSWSAMISCYANNEMELEAISVFVHMLESGVYPNEYCYSAVIRACSKVETIRIGEAVFGSVLKTGHLAADVCVGCG LIDMFVKGGKNLDDAYKVFDKMPERNVITWTLMITRFHQLGFGRDAINVFVDMVSSGIVPDRFTHSAVISACTELGSLSAGRQFHTWIIKSGNARDVCIG CSLVDMYAKCNLEGSLAESRKVFSRMQDHNVISWTTIITGYVQKNGGLHDMEAIELFLEMIQEGNVKPNEFTLAAVIKACTGLSNSRIGESLHGYAVKVG LESVNCVGNSVISMYAKFGHMEDSRKAFDVLFDKNLNSEDAGTKIDAFTFASLLSGSSSIGAINKGEQIHAQILKSRFEPSFHVSNALISMYSTCGNIEA AYQVFQDMETEGRNVISWTSMVTGFAKHGFSTRALETFHNMLEAGVKPNDVTYIAVLSACSHAGLVSEGWEYFESMRREHGIVPRMEHYSCMVDLLGRAG RLTEAMDFMNAMPFETNPLVLRTFLGACLVHGDTKLGKHAAEMMLDQDPDDPTAYVLLSNLYASAGKWEEVTEIRKEMKLRNLAKEAGCSWIETGNVVHK FHVGDSTHRRAFEIFDELKQLGEEIKELGYVPKTEFVLHDVGEEEKEMYLSITFNLVLLTGHVSCDQFSFRTRKSLFVIWLNFLMGQFLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	0	1
AT1G77270			unknown protein		Lus10042760 [exp]	2.6	0.8496
AT4G02210			unknown protein		Lus10013421 [exp]	3.5	0.8546
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	3.9	0.8576
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	5.0	0.8536
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10043188 [exp]	6.0	0.8498
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10000126 [exp]	7.1	0.8661
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	8.1	0.8380
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	8.9	0.8595
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10035676 [exp]	11.7	0.8242
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10001601 [exp]	12.2	0.8057

Compare expression of checked genes

Lus10004253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.